Detail information of GLYMA_01G074000_circ_g.4


General Information
CircRNA Name GLYMA_01G074000_circ_g.4
ID in PlantcircBase gma_circ_007883
Alias ciRNA618
Organism Glycine max
Position chr1: 14673058-14678007  JBrowse»
Reference genome v2.0.38
Type   i-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_01G074000
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues pod
Exon boundary   NA-NA
Splicing signals   TG-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGGGTGTGCATATGTTTCAGTCACTTGCTAGTCTGTTTACAAATTAACATTTGAAAAATAGA
ACCGAATCTGACTTCTTTTGTGGGATGAAAAGCTTAgtatttttatgtactgtaaggtattata
tgtgtgtttcacaaaaaatgttagtaaagatgcaattggatgctgagggtattagccttgaggt
gtggatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTATTTTTATGTACTGTAAGGTATTATATGTGTGTTTCACAAAAAATGTTAGTAAAGATGCAAT
TGGATGCTGAGGGTATTAGCCTTGAGGTGTGGATCAGTTGGCAACGTTAGCTCCATGTGGATGG
ACTTTACCTGCGGTGGTCTGAAAACCATGGGGTGCACCATGTGGTTATGGTCAAGCTGATTCTG
GAGTGGGGGTTAGCTCCATATCTTATGGGTCTAAACATGCCAAAAATTTTAAAAGTGATTTTTC
CTTAAAAGTTTCTGAAACAATTAGCCTCCAAAGGTGTGTGGCCATGCTCTGGTATTGCTAAATA
GTAAAGAGTGCTAATATCCTTTCCCATTATAGCTGTGAAAGAAAAGTGATGTTGCTGAACTGTA
GGTTTTTAAACTTGTCTACAGAAAAGGTACAAGGTTTGGTCCTTGATGTTCCCCCCCAAAAAAA
GATTTTTCCCATATTGAAGTAGCTTTTTTTCAAGGCAAAAATAAATGACCAGGTGTTTCTACAG
ACAAGTAGTATTGATTACACATAATTAGAGGATATTCAGTTTCCTCTAAATCAGATTTCATATC
CTATCACATCGTTATACATTGAATTCTTGATTCTCAACACTCCCCTTCTAGCTTCAGCTTACTA
AGCTTTAGCTTGTTAAAGAGAATATATTCCCAACAAAAACATAAAACTTAAGCTCCACTATAAA
AGACAATAGTTTGAATGATAACTCAGGGATGTTGATGAAGTCAGAGAATTTTGCTAGAAAGAGA
GCTGGAATATCCATCAGCCTAAGAAAAGCAAGTTTCAACTTTCTTAAAATCATCATTTGGAAGT
TTCAAACCAATATTTTGATGACAACTCAAGGATCTTGGTGAAATTGAGGAATATTGCTAGAAAG
AGAGCTGGAATATCCATCAGCTTAAGTAAATCCAAAGCAAGTTTCAATCTTCTTAAAACCAAGA
TTTGGAAGCTTCAAACGAACTGTGGAGACTCAAAATTATTAAAACTGAAGAGATGAAATTGCCA
TAAACAGCCACTGAAGCTAGAGAAGTTACCGAGAAACACTCCGAAAAAGGACAGTGACAAAATA
GGTGACCGAAAAGTTATTTGATGGAAAAAGAGTGGCGAGATGAAGGCGATGGCCGAAAAACATG
CTGAAAAGAAACAACGGTAAGATAGGTGCCTAAAAAGTTCTTCGTTGGAAATTGAACGGCAAAC
CACTCACTAAAGTCCTTGTAGGCAACAAGTATAGAAGCCATAGGAGAAAACAAGGCGCGCACAA
ACAAAACCTGCAACTAAAATGAAGCACACATCACAAAGCCTAGAGATGGGGACCATAAGGATGC
TTAGAATAGGGCGAATATCCTGGGGTAGGGTTGTACCCAGGGGCAACCCTAAACCTAGAATCAC
AACTTGTAAGAAGGCCTCACACGCCAGCATGGGCTGTTTGGCACGTCAAAGGAGCCGTGCGTGC
TCTAATGACGTGGTTGACAGATTTGTATAGATTGACAAAAAGAAAGTCTTATGGTGTAGTCACT
GGGTAGAAAGGTCGCCGACAGACGACAATCATCAGAAAATGTGTTGGAAAAGGTAAAAAGTTGT
CTGAAAAGCATAAAAGGTTTGTTGGAAGATGGGTGATGAGTAGAAAGGTCCATCAGAGCGGTTG
GTTGCTGAAAAAGTGACGATGGCTAGTGGTGACTTGTAAAGTTATCAAGAAAGCAGAAAAGGAT
TGTCGGAAAGCAAAAGCTAGTCACTAGAAGAAATGTGATGACCATAAAGGTCCATCGGGGACCG
TTTTTGTTATTCCCACAAGCCAGCTCTGATACCATGCTAAATGAGAGAATTTGAGCGATATTTG
TATGAAAACTTATGTCAAAGAGAACCTTTGGAGCTTGTTTATATAGACAGGTAGTATTGACTAT
TGATTACACATAATTAGTGGATATTTAGTTTCCTCATCAGATATCATATTCTATCACATCATCG
TACATTAAATTCCTAATTCTCAAGAGGATCATAACAACCACAAACATATGGATCCTTCCTATAA
ATGTGGGTCTATCCTAGATTCATTATACATAAGGGAGAGTGTTAGAAAACTTCCTTAATTGCGA
TCCCCCCAGCCTGCCTTAGTTGCGACCTCTTTAGAGGCTGCCTTAATTGTAGCTTCAAGGGTGG
TGGTTTAGTCCCACATCGACTAGTGATATGGTCAAAATAGTATATATGAGGGACAATCCTTACC
TTAAGATTTTGTAGGGTTCATTTTCTTGAAATCTAATGGTGTGATTTGTTACACATTATGGTTG
TGTTTTGTTTATAGGAGAGAAATAGAAGAGAAATTTATGAAGTACAAAACAAACACACCCTATA
TACAGGGGCATAAGGATTATACTATGAGAGTGTCTTTCTTATGTGAGAAATGAGAATGACTAAT
CTTAATTGTTGGAAAAACTCAAGTCTCAGATCAGTTAGAGATAAGGTCAAGATAAAGTATATAA
GTGGAAGGCAACCCTCATCCTATGAGTTAGTTTTTGGTGTTGAGTTAGGTCAAACCCACATTCT
AAGATGGTATCAAATCCTATCTTATATCCATTAATGGGCCACCCATCATATTATCCATGCCCCA
AGCCTAGAAAGTGTTGGGTGTGAGTTGGGGTGTATTGGGAAAAAGTCCAAGTCACACATCAGCT
AAAGATAAGGCCCAAATATAGTATAGTATATAAGTGAGGCATAATCTAGCTTTTGGGGATGATT
AGGCCCAATCTCACTTGCATAAGTGTTGGGCATGAGGGGTGTATTGAGAACAACTCAAGTCCCA
CATCGGCTAGAGATAGTGCAAAGATAGGATATATAAGTTAGGGATAACCTTCACACTATGAGCT
AGATTTTGAGGTTGACTTAGGTCCGAACTCACATTTTAAGATGGTATATGAGCCTATCATAGAT
CTATTAAATGAGTCACCGACCTATTTTCCACACACCAAGCCTAAAAGTGTTGGATGTGTTCGAA
AAACTCAAGTCCCACATCCCACATCAGTTAGAGATAAGGGCTAGATAGAGTATATAAGTGGGAG
ACAACCCTCTTCCTATGAGTTAGCTTTTGGGGTTGAGTTAGACCCAAACCCACATTCTGAGATC
AACCATTAAATTAAAATGGAAGACTTAAATTAAAATGCTTTGGAATTCATTAAAACCTCATGTG
ACCATTAAATTTGTAAATAAATTACTAAAGAAATTCAAATTTCTTAAAGATTGATCTCCGTTAT
TACGTATCTCAATTAAGACGTCACTCTTTGATTTTTTATTTGATGAGTAGTTTAGAGATTTGAT
TTTTGTTTGGTGAATATTTTAAAGATTTGATGTTCAGGTGAGGTTTTAATAAATTCTTAAGTAT
TTTAATCTAGGCCTTCCATTTTATTTTAATGTTTGAGATTAGCCATTTTTTTCTCACATAATGA
CATTTTTATAGGATATGCCTCGTATATATGTTTAGTCACTCGTGCAATTCACTAAATCTTATAA
TTCAACATTGATGAAATTCAGTGTGAGTAAAAAGTTGTTGAACTAAACGAGTTAGATAACACAT
ATTATTCGACTAAGTGGACCCCTTCTGTTTGGACTTGAGCATAGGAGGAGAGTCCATTAGGTGG
GAGGGCCTCATGGTTTAAGTACCTTATCATGTAGTTTATTCTAATCATAACAATGCCATCTGCA
TTAAGAACGAACGTCCACGGCAACCATCACTATTTTCTCTCTGACAACTTCATTCATGTATTAA
TAATTGGTTTGCACCATAATCCAGCCTGTATAGGTCACCCTTTCTGTAGCCTGACTCTCAATGA
AAGCATCAATTGTTAGGACTTAAGCACAAAAGGAGAGTTCTCTCCAAAAGCAAAAAACACAAAA
GGAGAGCTTAACTCAAAAGAAAAGTCTATTAGGTAGGAGAGCCTCATGGTTTAAGTGCACATTA
AGTAGTTTATTCTACTCAATGTGGAACTCCTAACATAAATTGATGTTAGCTGTAAGGATGCTCA
AGTCCTTCAATAAAACAAAGCTTACCAGTCACCGAGTCACTTTACTTCAAAGTCCCAAGTTGAA
GTACATTGATCTGTGCACTTGGCATGTCACTTTGCTGTCAAAGTTGATACAGAAAGAAGTGAGC
TATTTGGGAAGTTTTAAATAGGTCCTATACTTTAAAAGTTTGTAATTGAGTTCCTAAACTTACT
AGTCATTTTTAATTAGGCCCCTGAGCTTAGTTTCATCAAAGTAAGAATGATCTTTAATCCTTGT
TGAATTACATGATCTTGTTTAAAAATTCTCAAGTAGTTTAGGGACCCACTGGATAATTAAAATA
GTGATTTGGTTCTTCAGTTATTTGAGAATCTTCATATAGGCCCCTATAAACTGTACTTCGACGA
AACCTAGGGAGCCAATTAAAATGATTTATAAGCTCAATTAAAAACAATTATCAACAATTATTTT
TTTAATGCATGAATTGTTTAATTTTTGCTCATTCATTATATTTAAATGCAATGCACCTATTTGA
CAACCTGGAGGTATACACGTGAGGCATAAGCTAATATGTTCTGATTTTCTCCATATCTACATTG
ATGCTTGCTGCACTGGTCACTGTTAGATATTGGTCCTGTTTTGATAAACTAATCTAAACACACT
CATAGGAGGGAGAAGAAAATAAGAAGGTAATATGAAATAAATTTCTCCATAAATCAAAATTAGC
TTATGCACAATACAAAATCAGCTTTTGATGAAACTAAATGAAACAAGCTTTTCAATTAGCTTAT
TTCATTTTTATTTATTTTCTTCTTCTACAAGTGCTTATGGAGAAGTATCCAAGGGGTGTGCATA
TGTTTCAGTCACTTGCTAGTCTGTTTACAAATTAACATTTGAAAAATAGAACCGAATCTGACTT
CTTTTGTGGGATGAAAAGCTTA
Conservation Information
Conserved circRNAs NA
PMCS 0.148299081
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a