Detail information of GLYMA_06G032600_circ_g.2


General Information
CircRNA Name GLYMA_06G032600_circ_g.2
ID in PlantcircBase gma_circ_008272
Alias circRNA5317
Organism Glycine max
Position chr6: 2526313-2529100  JBrowse»
Reference genome v2.0.38
Type   e-circRNA
Identification method CIRI, CIRCexplorer
Parent gene GLYMA_06G032600
Parent gene annotation hypothetical protein
Parent gene strand +
Alternative splicing GLYMA_06G032600_circ_g.1
Support reads NA
Tissues pod
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered KRH51862:1
KRH51861:1
KRH51863:1
KRH51860:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTAGCCAGATAAACTCCCAAGCTTCTCTGTCAAAATACAGAGGGGATGATGATATGTTTTG
GGGTCCAGTCGAGCAATCCAAGCAAGAAAATAAGCAgtttacaagggtttcttggtaatgattc
tggtaatttgggcccatcaggagtagatagcggaatcaacctttacttactggccaagaggatg
gcacttga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTACAAGGGTTTCTTGGTAATGATTCTGGTAATTTGGGCCCATCAGGAGTAGATAGCGGAAT
CAACCTTTACTTACTGGCCAAGAGGATGGCACTTGAACGTCAAAGATCCTTGCCCAATGCTTAT
CCATACTGGCCAGGGAGGGATGCAGCACCCCTTCCACCAAAATCAGATATTTTTCCAGATGCAT
CGCCACATTCAAATATGTTGTCTTCTTTGAGTGACAATTCTCGTCTGCTTCAGTCCCAAAGTTC
TGAATTGATGTCAATAATCCAAGGATTATCTGATAGGTCGTCCACATGCTTAAATAGTGGCATT
GCTGGATGGCCAAATTTTCTTTTGCAAGGTGGATTGGATCCCCCCATTCAGAATAAGATTGACT
TGCAAGGTGGATTGGATCCCCCCATTCATGATCAAAATTATGTTCAAATGCCATTTGGAATTCA
ACAACAAAGATTGCAAACACTGAATCAATTGCCCTTAAATAACTTAATTGCTCAAAATTCAGAT
ATTCCATCTAGTATTTTGACAGCAGAGAAATTGCTTTCTTCTGGTTTATCCCAAGATCCCGAAA
TGTTGAATATGTTGCAGCAGCAGCACTTGCTGCAGTTGCATTCTCAGGCAGCAGTGGCTCCTTC
ACAACAGTTGCATTCTCAGGCAGCTGCTCCTTCACAAACTATGCCTTTGTTAGATAAACTTCTA
TTGCTAAAGCAGCAACAGCAGCAGGAGGAGCAACAGCTGTTATTGCGCCAACAACAGCAGCTGC
TTTCTCAAGTGCTTCAGGAGCATCAGTCTCACCAGCGCTTTGGCAATTTATCTTATCAACAGTT
TCAGGGAGGTGGAATACCCCTTGGGAATTTGCATGTGAATCTTTCTCAAATTCAACCACCAAAA
GAAATTTTTCCCATGAGCTCTCAGACACCAATTCCCAGTGTTCAGGGTGAGCTTACTACTAATT
CTTTGGATTTACCTCTGCAAGTAAGCCAGGACACTAGCTATAATATAAGCAGTGAATCTTCTGC
CCAGTTGTCTGACCAATTATTTGAGAATATTGGTGATCAGAAAAGCTGGAGTGCTACACTTCCT
GAGCAAATTAATGACAATTACCAGAAGGAAACATTGCCTGTATCAGCTTCTGTTGAAGGCTCAC
TATTGCTTGAGCAGAGCAGAGCCAAAGAGGAACCCGGCAATGCCCAGAAACTTCTTCCTTTTTC
TGACTATACTGCTAAAACCTTGGAGCAGATGCCAGACAATACTTGTAGGAATGATGATACCCTT
GTGAGTGCAACTTCAGAGTCTGATGAGAATTCTCAGCCGATACAGTGTGTCACACCTGCTGTGG
ATATGTCTTCAGCTGCATCTTGTGGTACCGAGTTACCACTAGTTAGTCAACTGAGTGAAGATGT
AGAGATTAAATCAGATAGTCTTGAAGAGCATCATGGTGGAAGAGAGAGCTCAAAGATTGATCCC
TCAGTGGTTGATGTGAGAAGTATTGAAGTACGTGAACCCAAAAAGACTGCTGAGAAGAAATCTA
AGAAGCAAAAATCTTCTAAATCTCAGTCTTCTGGTCAGGCAAAGGGATTGCTAAAAAATGTCCC
TTTGCAGCAGTCAAAGAAATCAGAACCTGAGAAGCCAAATTATAGTGAAGCCAACAAGGGTGAA
CCAGCTCATGAAACATTTATGCAACAAACAAAGGGTAAGGATAAACAATCTGCAACTGCTACTG
CAGAAACAGATGATAATCAAGAAGTTAGTGGCCTACCTACTAATATTCCAGGAAGCAACACTAA
AACAGTTATCGAAAATGAGTTAAAGGCAGTCAGTTCTGTTGCCACACAGAATACTGAATTACCT
TCAGCGAGAGCTTGGAAACCTGCTCCTGGTTTCAAGGCAAAATCTCTCTTAGAAATTCAACTGG
AAGAACAAAAAAAGTCACTGACAGAAAAGCTTGTATCTGAGGTTGCTACTCCTGTCAATTCCAT
GAGCTCAACAACTCCCTGGGTTGGAGTTGTCGCCAATCCAGACTCTATGAAGGTGTCAAATGAT
GGCCACAGAGAAGCAGAAAATACTGAATATCTGGCTAAAGCTGAAAAATCTCAAAATAGTAAAA
GCAAGAAAAGCCCATTACATGATCTATTGGCAGAAGATCTTGTACCAAAATCTAGTGAAAGAGA
TGGCAAGGTTCCTGACAGTATGCTCCCCTCACAAAATATAGCTGTTCACTCAAAACTGGTAGAT
GATGGAGACTTTATTGAAGCTAAAGACACTAAAAGAAGCCGGAAAAAATCTGCAAAGTTGAAGA
GTTCAGGAGCTAAGGTTTCAATGCCAGTTGCCTCTAGTGAAGTACCCATAAGCCCAATTCACAT
TGAAAAGGTAAAAAGCTCCCGTTCTGTTCAGCAGGAGAAAGAACAACTGCCTTCCATTCCTTCA
GGACCCTCTTTGGGAGATTTTGTTCTTTGGAAAGGAGAGCCAACAAGCCCATCTCCTCCTCCAG
CATGGACTACTGATTCTGCTAGGATTCCTAAACCAACATCATTAAGGGACATTCTAAAGGAGCA
GGAGAAGAAGTCCTCTGCAGTACTCCCAAATCAACTGCCTACTCCTCAAAAATCACAAACTGCC
CAAGCTGCACGGAGTAGTGGTTCTTCACGCCCAATTTCAGCTTCATCTCCATCAAAAACTGCAC
CTTCTAGCCAGATAAACTCCCAAGCTTCTCTGTCAAAATACAGAGGGGATGATGATATGTTTTG
GGGTCCAGTCGAGCAATCCAAGCAAGAAAATAAGCA
Conservation Information
Conserved circRNAs NA
PMCS 0.045594961
Functional Information
Coding potential Y
Potential coding position 2529050-2526331(+)
2526403-2526331(+)
2526359-2528920(-)
Potential amino acid sequence MMICFGVQSSNPSKKISSLQGFLGNDSGNLGPSGVDSGINLYLLAKRMALERQRSLPNAYPYWP
GRDAAPLPPKSDIFPDASPHSNMLSSLSDNSRLLQSQSSELMSIIQGLSDRSSTCLNSGIAGWP
NFLLQGGLDPPIQNKIDLQGGLDPPIHDQNYVQMPFGIQQQRLQTLNQLPLNNLIAQNSDIPSS
ILTAEKLLSSGLSQDPEMLNMLQQQHLLQLHSQAAVAPSQQLHSQAAAPSQTMPLLDKLLLLKQ
QQQQEEQQLLLRQQQQLLSQVLQEHQSHQRFGNLSYQQFQGGGIPLGNLHVNLSQIQPPKEIFP
MSSQTPIPSVQGELTTNSLDLPLQVSQDTSYNISSESSAQLSDQLFENIGDQKSWSATLPEQIN
DNYQKETLPVSASVEGSLLLEQSRAKEEPGNAQKLLPFSDYTAKTLEQMPDNTCRNDDTLVSAT
SESDENSQPIQCVTPAVDMSSAASCGTELPLVSQLSEDVEIKSDSLEEHHGGRESSKIDPSVVD
VRSIEVREPKKTAEKKSKKQKSSKSQSSGQAKGLLKNVPLQQSKKSEPEKPNYSEANKGEPAHE
TFMQQTKGKDKQSATATAETDDNQEVSGLPTNIPGSNTKTVIENELKAVSSVATQNTELPSARA
WKPAPGFKAKSLLEIQLEEQKKSLTEKLVSEVATPVNSMSSTTPWVGVVANPDSMKVSNDGHRE
AENTEYLAKAEKSQNSKSKKSPLHDLLAEDLVPKSSERDGKVPDSMLPSQNIAVHSKLVDDGDF
IEAKDTKRSRKKSAKLKSSGAKVSMPVASSEVPISPIHIEKVKSSRSVQQEKEQLPSIPSGPSL
GDFVLWKGEPTSPSPPPAWTTDSARIPKPTSLRDILKEQEKKSSAVLPNQLPTPQKSQTAQAAR
SSGSSRPISASSPSKTAPSSQINSQASLSKYRGDDDMFWGPVEQSKQENKQFTRVSW*(+)
MALERQRSLPNAYPYWPGRDAAPLPPKSDIFPDASPHSNMLSSLSDNSRLLQSQSSELMSIIQG
LSDRSSTCLNSGIAGWPNFLLQGGLDPPIQNKIDLQGGLDPPIHDQNYVQMPFGIQQQRLQTLN
QLPLNNLIAQNSDIPSSILTAEKLLSSGLSQDPEMLNMLQQQHLLQLHSQAAVAPSQQLHSQAA
APSQTMPLLDKLLLLKQQQQQEEQQLLLRQQQQLLSQVLQEHQSHQRFGNLSYQQFQGGGIPLG
NLHVNLSQIQPPKEIFPMSSQTPIPSVQGELTTNSLDLPLQVSQDTSYNISSESSAQLSDQLFE
NIGDQKSWSATLPEQINDNYQKETLPVSASVEGSLLLEQSRAKEEPGNAQKLLPFSDYTAKTLE
QMPDNTCRNDDTLVSATSESDENSQPIQCVTPAVDMSSAASCGTELPLVSQLSEDVEIKSDSLE
EHHGGRESSKIDPSVVDVRSIEVREPKKTAEKKSKKQKSSKSQSSGQAKGLLKNVPLQQSKKSE
PEKPNYSEANKGEPAHETFMQQTKGKDKQSATATAETDDNQEVSGLPTNIPGSNTKTVIENELK
AVSSVATQNTELPSARAWKPAPGFKAKSLLEIQLEEQKKSLTEKLVSEVATPVNSMSSTTPWVG
VVANPDSMKVSNDGHREAENTEYLAKAEKSQNSKSKKSPLHDLLAEDLVPKSSERDGKVPDSML
PSQNIAVHSKLVDDGDFIEAKDTKRSRKKSAKLKSSGAKVSMPVASSEVPISPIHIEKVKSSRS
VQQEKEQLPSIPSGPSLGDFVLWKGEPTSPSPPPAWTTDSARIPKPTSLRDILKEQEKKSSAVL
PNQLPTPQKSQTAQAARSSGSSRPISASSPSKTAPSSQINSQASLSKYRGDDDMFWGPVEQSKQ
ENKQFTRVSW*(+)
MGPNYQNHYQETLVNCLFSCLDCSTGPQNISSSPLYFDREAWEFIWLEGAVFDGDEAEIGREEP
LLRAAWAVCDF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021a