Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | GLYMA_06G032600_circ_g.2 |
| ID in PlantcircBase | gma_circ_008272 |
| Alias | circRNA5317 |
| Organism | Glycine max |
| Position | chr6: 2526313-2529100 JBrowse» |
| Reference genome | v2.0.38 |
| Type | e-circRNA |
| Identification method | CIRI, CIRCexplorer |
| Parent gene | GLYMA_06G032600 |
| Parent gene annotation |
hypothetical protein |
| Parent gene strand | + |
| Alternative splicing | GLYMA_06G032600_circ_g.1 |
| Support reads | NA |
| Tissues | pod |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | KRH51862:1 KRH51861:1 KRH51863:1 KRH51860:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.045594961 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
2529050-2526331(+) 2526403-2526331(+) 2526359-2528920(-) |
| Potential amino acid sequence |
MMICFGVQSSNPSKKISSLQGFLGNDSGNLGPSGVDSGINLYLLAKRMALERQRSLPNAYPYWP GRDAAPLPPKSDIFPDASPHSNMLSSLSDNSRLLQSQSSELMSIIQGLSDRSSTCLNSGIAGWP NFLLQGGLDPPIQNKIDLQGGLDPPIHDQNYVQMPFGIQQQRLQTLNQLPLNNLIAQNSDIPSS ILTAEKLLSSGLSQDPEMLNMLQQQHLLQLHSQAAVAPSQQLHSQAAAPSQTMPLLDKLLLLKQ QQQQEEQQLLLRQQQQLLSQVLQEHQSHQRFGNLSYQQFQGGGIPLGNLHVNLSQIQPPKEIFP MSSQTPIPSVQGELTTNSLDLPLQVSQDTSYNISSESSAQLSDQLFENIGDQKSWSATLPEQIN DNYQKETLPVSASVEGSLLLEQSRAKEEPGNAQKLLPFSDYTAKTLEQMPDNTCRNDDTLVSAT SESDENSQPIQCVTPAVDMSSAASCGTELPLVSQLSEDVEIKSDSLEEHHGGRESSKIDPSVVD VRSIEVREPKKTAEKKSKKQKSSKSQSSGQAKGLLKNVPLQQSKKSEPEKPNYSEANKGEPAHE TFMQQTKGKDKQSATATAETDDNQEVSGLPTNIPGSNTKTVIENELKAVSSVATQNTELPSARA WKPAPGFKAKSLLEIQLEEQKKSLTEKLVSEVATPVNSMSSTTPWVGVVANPDSMKVSNDGHRE AENTEYLAKAEKSQNSKSKKSPLHDLLAEDLVPKSSERDGKVPDSMLPSQNIAVHSKLVDDGDF IEAKDTKRSRKKSAKLKSSGAKVSMPVASSEVPISPIHIEKVKSSRSVQQEKEQLPSIPSGPSL GDFVLWKGEPTSPSPPPAWTTDSARIPKPTSLRDILKEQEKKSSAVLPNQLPTPQKSQTAQAAR SSGSSRPISASSPSKTAPSSQINSQASLSKYRGDDDMFWGPVEQSKQENKQFTRVSW*(+) MALERQRSLPNAYPYWPGRDAAPLPPKSDIFPDASPHSNMLSSLSDNSRLLQSQSSELMSIIQG LSDRSSTCLNSGIAGWPNFLLQGGLDPPIQNKIDLQGGLDPPIHDQNYVQMPFGIQQQRLQTLN QLPLNNLIAQNSDIPSSILTAEKLLSSGLSQDPEMLNMLQQQHLLQLHSQAAVAPSQQLHSQAA APSQTMPLLDKLLLLKQQQQQEEQQLLLRQQQQLLSQVLQEHQSHQRFGNLSYQQFQGGGIPLG NLHVNLSQIQPPKEIFPMSSQTPIPSVQGELTTNSLDLPLQVSQDTSYNISSESSAQLSDQLFE NIGDQKSWSATLPEQINDNYQKETLPVSASVEGSLLLEQSRAKEEPGNAQKLLPFSDYTAKTLE QMPDNTCRNDDTLVSATSESDENSQPIQCVTPAVDMSSAASCGTELPLVSQLSEDVEIKSDSLE EHHGGRESSKIDPSVVDVRSIEVREPKKTAEKKSKKQKSSKSQSSGQAKGLLKNVPLQQSKKSE PEKPNYSEANKGEPAHETFMQQTKGKDKQSATATAETDDNQEVSGLPTNIPGSNTKTVIENELK AVSSVATQNTELPSARAWKPAPGFKAKSLLEIQLEEQKKSLTEKLVSEVATPVNSMSSTTPWVG VVANPDSMKVSNDGHREAENTEYLAKAEKSQNSKSKKSPLHDLLAEDLVPKSSERDGKVPDSML PSQNIAVHSKLVDDGDFIEAKDTKRSRKKSAKLKSSGAKVSMPVASSEVPISPIHIEKVKSSRS VQQEKEQLPSIPSGPSLGDFVLWKGEPTSPSPPPAWTTDSARIPKPTSLRDILKEQEKKSSAVL PNQLPTPQKSQTAQAARSSGSSRPISASSPSKTAPSSQINSQASLSKYRGDDDMFWGPVEQSKQ ENKQFTRVSW*(+) MGPNYQNHYQETLVNCLFSCLDCSTGPQNISSSPLYFDREAWEFIWLEGAVFDGDEAEIGREEP LLRAAWAVCDF*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021a |