Detail information of BGIOSGA016256_circ_g.1


General Information
CircRNA Name BGIOSGA016256_circ_g.1
ID in PlantcircBase osi_circ_014292
Alias Chr04:19201116_19202258(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16361641-16362784  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA016256
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-GA
Number of exons covered BGIOSGA016256-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTCGCTGCCTTGGGGACAATGAG
AAAGAATGCCCAGAATGTGCTCCCGAATATAGATCTggtcaaggaggtattgacctatattgaa
aaggaggatgttttgcctcctattgttgtgctagagacattgtcgaaaaacccatgcttgacac
tgtcagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCAAGGAGGTATTGACCTATATTGAAAAGGAGGATGTTTTGCCTCCTATTGTTGTGCTAGAG
ACATTGTCGAAAAACCCATGCTTGACACTGTCAGTTGTCAAGGATTACATTGCCCGCAAACTTG
AGCAAGAATCAAAGCTAATCGAAGAAGATAGGAAATCTATTGACAAGTACCAGGTTGGCAATTT
AACTGTGCTACCTTTTTCCTTGCAGCTTTTACAATAGTTGGGAGAAGGAATTGGTATCCATTAA
TAGTTTAGTTTGCTGCAACATAAGATTGAAAAGCCTTCCTCTATTGCTGCTAGATACAATACAA
AACATGTTCAAGCCAAAAAAAACAAATATTAGAGGATTTTTTGTTCATATATTTCACTAAAATA
TGTTTGAGCTGTCATACTTGATATAGTCATTAAATTATTTTCATACAGTTTTGTACTCTGTATA
GTCAATGTCCTAAACTTTGTAGTTAGATGTGGCTGTTGCACAGCTATTGGCATGTGGTCTCACA
AGGTGCCTTTCCATGTGATGAACCTTTGTATGGATATACTTAAACACTAGATTTCAGTTGAAAT
GTGTTTCAGGACAAATTTGTTTTAATTTACTGAGTTCAGCAATTTGTTTTGCATCACACATTCC
ATGTGTATGTTGTCTCTCAGTTAGTCAGTTTGATGACCTTAGAATTTATTTAATCATGCAGTGT
AGCATGATTAACCAGCTGTTGGAGTGTTGATACACACTTTGCACCACGGGTTACTTTTTGTGTG
TAATATATATTTGAGTTGACATAATTACCATGATAAATAATTTGTTAGCGCTTAACAATGATGA
GTGCCATCCTTTATTTGGAAAGATGACAGAAAACGTTACTAAATCCCAGCAACAACCTACATAG
AAACGATAACAAATAGATAACTATTGATAACATCTTTTTTGTTTATACAGGATGAGACAGAACT
GATGAAAAGGGAGATAGAAGACCTCAAGACAAACGCAAAGGTCTTTCAGCTTAGCAAGTGTACG
GCGTGCACCTTTACGCTTGACCTTCCTGCGGTCCACTTCATGTGCATGCACTCCTTCCACCTTC
GCTGCCTTGGGGACAATGAGAAAGAATGCCCAGAATGTGCTCCCGAATATAGATCT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021