Detail information of Os05g0548600_circ_g.2


General Information
CircRNA Name Os05g0548600_circ_g.2
ID in PlantcircBase osa_circ_042171
Alias NA
Organism Oryza sativa
Position chr5: 27219351-27219438  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0548600
Parent gene annotation Pentatricopeptide repeat domain containing protein. (Os05t054860
0-00)
Parent gene strand +
Alternative splicing Os05g0548600_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   AT-AC
Number of exons covered Os05t0548600-00:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTCCGCCGCCACATTCCATTCCCTCCTCAACGCCCTTGTGTCCAgccgcggtcggcgtcttccg
caccgtcccggccttctgctccca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 88
Transcript exons: 27219351-27219438
GCCGCGGTCGGCGTCTTCCGCACCGTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATT
CCCTCCTCAACGCCCTTGTGTCCA

Genomic sequence GCCGCGGTCGGCGTCTTCCGCACCGTCCCGGCCTTCTGCTCCCACTCCGCCGCCACATTCCATT
CCCTCCTCAACGCCCTTGTGTCCA
Conservation Information
Conserved circRNAs NA
PMCS 0.124090909
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study