Plant Circular RNA Database

Detail information of Os01g0231900_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os01g0231900_circ_g.2
					
						ID in PlantcircBase
						osa_circ_000950
					
						Alias
						Os_ciR1630
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr1: 7289170-7292703  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ei-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os01g0231900						
					
						Parent gene annotation
						
							K Homology, type 1, subgroup domain containing protein. (Os01t02
31900-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os01g0231900_circ_g.1 Os01g0231900_circ_g.3 Os01g0231900_circ_g.4 Os01g0231900_circ_g.5 Os01g0231900_circ_g.6 						
					
						Support reads
						7
					
						Tissues
						root
					
						Exon boundary  
						
							No-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os01t0231900-01:8

General Information
CircRNA Name	Os01g0231900_circ_g.2
ID in PlantcircBase	osa_circ_000950
Alias	Os_ciR1630
Organism	Oryza sativa
Position	chr1: 7289170-7292703 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ei-circRNA
Identification method	find_circ
Parent gene	Os01g0231900
Parent gene annotation	K Homology, type 1, subgroup domain containing protein. (Os01t02 31900-01)
Parent gene strand	+
Alternative splicing	Os01g0231900_circ_g.1 Os01g0231900_circ_g.3 Os01g0231900_circ_g.4 Os01g0231900_circ_g.5 Os01g0231900_circ_g.6
Support reads	7
Tissues	root
Exon boundary	No-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os01t0231900-01:8

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCATTCCAGACATGCATGAAAGGCTCACCAGCTAGGGCCAGGGTAGTATATGCTCCTGTGCTGG
AAGTTGGTGAAGAGGGACGCCTACAACGTGCTTGCAcattgggtggcacttctgaatcatccta
tattccacatgatgcagctgaccttaatgagatgtcaggtcctgtaagcaaacaagtggaagag
aattcagc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 107
Transcript exons: 7289170-7289235,7292663-7292703
CATTGGGTGGCACTTCTGAATCATCCTATATTCCACATGATGCAGCTGACCTTAATGAGATGTC
AGGCTGGAAGTTGGTGAAGAGGGACGCCTACAACGTGCTTGCA
						
					

						Genomic sequence
						
							CATTGGGTGGCACTTCTGAATCATCCTATATTCCACATGATGCAGCTGACCTTAATGAGATGTC
AGGTCCTGTAAGCAAACAAGTGGAAGAGAATTCAGCCTCAGATGGAACAACTAATGTTGTTATT
GAAGTTTCCACCTACAACGCATCCTTGCCAGAAAATAAATTAGCCACAGAAGATACTATGGAGG
ATGCTAGCTTCAATAAGGACATAGATAGGTCCAATCTATCTGAAAAGTGTTCCTCTTCTGTTCA
GGTATGCTCGGTGGATATGTATGACAATTAATGTATCTTTTCCCTGTAAAAAGCTCAATGTATG
AGTGATATTTACTTGTATTCTTTTCAAATATTCATGAATTCTGTTCTTTTCTAGGTAGATGCTC
CTCTGATGCGCTTTGTGAAAGGAAAAGGGTATTGGTCTCTTGAACCTGTTTCAGATATGCATTA
TCCTCAACTATCCTCAGTTGAGGATAATGCTGGCCTGTCTCTCTCTGTGACTGAGAATCAATCG
TATTCTTTGGCATGCAGTGGAACCATGCAGAAGCAGATTGAAGATGAAACTGGGGTCAAAATTA
TATTTCCATCTTCTAAGGAGGAAACATGTGTTGGTAAAGATATACTGTTTATTTTTCAAATATG
CTTGATGAAATAAGCTGTTGGTAACTTTGGAAGCTAATGTTTGTGCTATATTGATTATTTTCAG
TTCTTGAAGCTAAAACTACTGAAGATATTAGAAAGGCTTCAGAGAAAATTGCAAAGGTTCTTGA
AGAGGTACACGTGATGCACTTTTTTTAAGATAAAGGAAGCTTTATTGATCTTAAACAATTACAT
CAAGACAATACAATTACTCTAAGACCAGTCCCAGCCTCTGCATGATTAAGATGCACACGACTTA
CGATTATTACAAAAGAAAAGCGGCACAACAACAAATATCATGCCGCAGCGAACTACAAACACAA
GCGATCTTCATACTTGCACGCATGTGGTGCACTGCTGCAATGGCTTATTATTTCCTGATACTCT
GTGCATGTATCTATATTAGGCGTGGGCAGTAAAATCCCGAAGACTGAAAGCCGAACCGACCCGA
GCCGAACCGAACCGAAGTGTCGGGTTTTTCAGGCTTCGGTTTATCCTTCGGTTTTTATTCTGCA
TTTGTTCGGTGTATGGTTTTTTCTGCGGTTTCCAATCCTCACGAACCAAACAACCCGAGAAAAC
CGAAACCACACGTTCACATCATATCCCAGCAACCCAGCCTGGTAACATGAAAGGCCCAACATCT
CCTAAACAAGGCACAGAGCCCATTAGTTTAACACTACTCGTATCTTCTCAAGCGGTCAAGCCTA
TTCATCGACATCTCGACATCGATCTTTGCACGCGCATGGCTGGATTGGATGGCTACCTTAACGA
TGCTGCCGCTGCCACTGCATGCGTGGACGATTGCCTCGGGCAGCTGCATAGCTGCCACATGCAC
ACATCACTCATAGCTGGCAGTTTGCTCAGATTGCAAGTTTTATGACTCCTACCATGTGCGAGGG
CAGAAAGCAACTTCTCCCCTCTCGATTTTTATGAACCATCTAGCGATTCATTTGATTATCGTGT
GCTTCGGAATTCATGGAAGATGTTCTCCCGGTTTGTTCGGTGAAACCGAACAACCAAACCAAAC
AAACTCGGTTTGTTCGGCTCGGTTTTTTACCTTTTCAATAGATACTTCGGTTAGCATATCTGCA
AAACCGAACTTCTAACAAACCGAATAAACCGAGGAAACCAAACGCCCACCCCTAATCTATATTA
CTATAGCATAATAGTTTGTGGTGCTTATTACACTAACATTCTTATTCATTTCCTCCTGATCATT
TAATGAAATATACAAGCTATGATAGTTATGAGTGTCAAAGTTTAAAGGCCTTACTATGTTAACA
ATAATATATCAAAGCACAAAAATTGATGCAGGATACCTCTTATATTTCTTGCAGTAGCACTAGA
CTAGTCCAAGTTAAAGTTGTCAAAAGGTGTAAAGTTGTGTCTCCCATCACCAGTGAGCTACTCA
CAAATATAATCTACTGCCACCTGATTTGATAAAGTCATGTTTGAAATCCTATTTATGTCAGCTA
ATCATGGTTATCACCCTGGACGGCTGAGCTCCTCCTTTTTATTTCAGGCCGTGAAAAGTCCAAT
ACTAGATTACTCTCACTTCATTTCGCTTCCATTGGCTATCCACCCAAGCCTTGTTGAGAAGCTG
AACCACTTCCAGTGCTCAATCCTTGGGACTTCTTCTAATGTAGATAGTGATAAGGGTGAGGACC
TAAGTGAAGGTTCTATGGATGAAATTGACCATGAACAGAAGCAAGAAAGGAGCCCTAGTGTTTC
AATAAAGATGCAAGCCCATGAGGAGTCTGTCAGAGTTAAAATGGATATTAAGGGCTCCCAACCA
GGTCTAAAAGCTTTGCTGATTTTCCTGCTATTTCGTTTTATCGGAGTTTTCCTATTGTCAACTC
TATAAAGTCCGGTTTTTGGAACTTTCTATAGTACAAGTCAATTACACAACTAAGAGGGCTGGTG
TGTTTGTGAAGAGTTAGATGTGCAGCTCTAATTTTTAATCTGTCAAGTTGGGAAGTTTTGTATT
TTAAGTTTTATTTCTTATTTTTAACATTCCACACTGTTGATTTTGGTGGTGAGATTCAAACGAT
TGTGAGTAATATTGCAGATGTAACATTTTCTAGTATCTCTATGTTTAACAATGTAATAAATAAT
AAGGCAAGCTAATGAATATTTGAAGTTTGGAATTTAAGAAAAAAAAAAGTTCTCTTGTTTGCCA
AGCAAATCTCATATCTGTATTTTGTTTTGTAAATTTTGTTTGTACACCTGTGGCATATTGACGG
TACTAGATGCATTGCTTGTTATGCAATTTCCAAATTACAAGTTCTATGCTCTTCAGGCATTGAA
CTAAGCTTTCTTATCATTTGTAGACTTCGGCATTGACAAGTCAATATTTATTAAACCCAAAACC
TTTCACCTAACGGTTCTTATGTTGAAGCTATGGAATAAGGATCGCATTGCTAAGGCTTCTGATG
TGCTCCAGGTAATTTCCGTTTCCAGATTATTGTGGTTTATTGTCTGAGATGACAGTGAGCAACT
TAATGTGTTACCTTGTGGATACAGTCAGTATCGTCCCAAGTAATGGAAGCCTTGGAAAACCGAC
CAATCTCCATACAACTTAGAGGTCTGGTGAGTTGCCATTCTCGAATAGTTCTGGCTGGAAGCTC
ATTCATGCATACATCTAGAATAGCAAATGTAGATAATTCGAGCCAGAGAACAAAATATTTGTTC
CTAAACACATTGTTGCTGCAAACCACATTTTAATACCTGTTTATAAAAGGTATCTGTACTGTTT
CTCCCACCTTTTCCAATAATTCAAAGTTCCAATGAGAATATTTCATTCCAGACATGCATGAAAG
GCTCACCAGCTAGGGCCAGGGTAGTATATGCTCCTGTGCTGGAAGTTGGTGAAGAGGGACGCCT
ACAACGTGCTTGCA
						
					

			
		

Sequences
Splice junction sequence	TCATTCCAGACATGCATGAAAGGCTCACCAGCTAGGGCCAGGGTAGTATATGCTCCTGTGCTGG AAGTTGGTGAAGAGGGACGCCTACAACGTGCTTGCAcattgggtggcacttctgaatcatccta tattccacatgatgcagctgaccttaatgagatgtcaggtcctgtaagcaaacaagtggaagag aattcagc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 107 Transcript exons: 7289170-7289235,7292663-7292703 CATTGGGTGGCACTTCTGAATCATCCTATATTCCACATGATGCAGCTGACCTTAATGAGATGTC AGGCTGGAAGTTGGTGAAGAGGGACGCCTACAACGTGCTTGCA
Genomic sequence	CATTGGGTGGCACTTCTGAATCATCCTATATTCCACATGATGCAGCTGACCTTAATGAGATGTC AGGTCCTGTAAGCAAACAAGTGGAAGAGAATTCAGCCTCAGATGGAACAACTAATGTTGTTATT GAAGTTTCCACCTACAACGCATCCTTGCCAGAAAATAAATTAGCCACAGAAGATACTATGGAGG ATGCTAGCTTCAATAAGGACATAGATAGGTCCAATCTATCTGAAAAGTGTTCCTCTTCTGTTCA GGTATGCTCGGTGGATATGTATGACAATTAATGTATCTTTTCCCTGTAAAAAGCTCAATGTATG AGTGATATTTACTTGTATTCTTTTCAAATATTCATGAATTCTGTTCTTTTCTAGGTAGATGCTC CTCTGATGCGCTTTGTGAAAGGAAAAGGGTATTGGTCTCTTGAACCTGTTTCAGATATGCATTA TCCTCAACTATCCTCAGTTGAGGATAATGCTGGCCTGTCTCTCTCTGTGACTGAGAATCAATCG TATTCTTTGGCATGCAGTGGAACCATGCAGAAGCAGATTGAAGATGAAACTGGGGTCAAAATTA TATTTCCATCTTCTAAGGAGGAAACATGTGTTGGTAAAGATATACTGTTTATTTTTCAAATATG CTTGATGAAATAAGCTGTTGGTAACTTTGGAAGCTAATGTTTGTGCTATATTGATTATTTTCAG TTCTTGAAGCTAAAACTACTGAAGATATTAGAAAGGCTTCAGAGAAAATTGCAAAGGTTCTTGA AGAGGTACACGTGATGCACTTTTTTTAAGATAAAGGAAGCTTTATTGATCTTAAACAATTACAT CAAGACAATACAATTACTCTAAGACCAGTCCCAGCCTCTGCATGATTAAGATGCACACGACTTA CGATTATTACAAAAGAAAAGCGGCACAACAACAAATATCATGCCGCAGCGAACTACAAACACAA GCGATCTTCATACTTGCACGCATGTGGTGCACTGCTGCAATGGCTTATTATTTCCTGATACTCT GTGCATGTATCTATATTAGGCGTGGGCAGTAAAATCCCGAAGACTGAAAGCCGAACCGACCCGA GCCGAACCGAACCGAAGTGTCGGGTTTTTCAGGCTTCGGTTTATCCTTCGGTTTTTATTCTGCA TTTGTTCGGTGTATGGTTTTTTCTGCGGTTTCCAATCCTCACGAACCAAACAACCCGAGAAAAC CGAAACCACACGTTCACATCATATCCCAGCAACCCAGCCTGGTAACATGAAAGGCCCAACATCT CCTAAACAAGGCACAGAGCCCATTAGTTTAACACTACTCGTATCTTCTCAAGCGGTCAAGCCTA TTCATCGACATCTCGACATCGATCTTTGCACGCGCATGGCTGGATTGGATGGCTACCTTAACGA TGCTGCCGCTGCCACTGCATGCGTGGACGATTGCCTCGGGCAGCTGCATAGCTGCCACATGCAC ACATCACTCATAGCTGGCAGTTTGCTCAGATTGCAAGTTTTATGACTCCTACCATGTGCGAGGG CAGAAAGCAACTTCTCCCCTCTCGATTTTTATGAACCATCTAGCGATTCATTTGATTATCGTGT GCTTCGGAATTCATGGAAGATGTTCTCCCGGTTTGTTCGGTGAAACCGAACAACCAAACCAAAC AAACTCGGTTTGTTCGGCTCGGTTTTTTACCTTTTCAATAGATACTTCGGTTAGCATATCTGCA AAACCGAACTTCTAACAAACCGAATAAACCGAGGAAACCAAACGCCCACCCCTAATCTATATTA CTATAGCATAATAGTTTGTGGTGCTTATTACACTAACATTCTTATTCATTTCCTCCTGATCATT TAATGAAATATACAAGCTATGATAGTTATGAGTGTCAAAGTTTAAAGGCCTTACTATGTTAACA ATAATATATCAAAGCACAAAAATTGATGCAGGATACCTCTTATATTTCTTGCAGTAGCACTAGA CTAGTCCAAGTTAAAGTTGTCAAAAGGTGTAAAGTTGTGTCTCCCATCACCAGTGAGCTACTCA CAAATATAATCTACTGCCACCTGATTTGATAAAGTCATGTTTGAAATCCTATTTATGTCAGCTA ATCATGGTTATCACCCTGGACGGCTGAGCTCCTCCTTTTTATTTCAGGCCGTGAAAAGTCCAAT ACTAGATTACTCTCACTTCATTTCGCTTCCATTGGCTATCCACCCAAGCCTTGTTGAGAAGCTG AACCACTTCCAGTGCTCAATCCTTGGGACTTCTTCTAATGTAGATAGTGATAAGGGTGAGGACC TAAGTGAAGGTTCTATGGATGAAATTGACCATGAACAGAAGCAAGAAAGGAGCCCTAGTGTTTC AATAAAGATGCAAGCCCATGAGGAGTCTGTCAGAGTTAAAATGGATATTAAGGGCTCCCAACCA GGTCTAAAAGCTTTGCTGATTTTCCTGCTATTTCGTTTTATCGGAGTTTTCCTATTGTCAACTC TATAAAGTCCGGTTTTTGGAACTTTCTATAGTACAAGTCAATTACACAACTAAGAGGGCTGGTG TGTTTGTGAAGAGTTAGATGTGCAGCTCTAATTTTTAATCTGTCAAGTTGGGAAGTTTTGTATT TTAAGTTTTATTTCTTATTTTTAACATTCCACACTGTTGATTTTGGTGGTGAGATTCAAACGAT TGTGAGTAATATTGCAGATGTAACATTTTCTAGTATCTCTATGTTTAACAATGTAATAAATAAT AAGGCAAGCTAATGAATATTTGAAGTTTGGAATTTAAGAAAAAAAAAAGTTCTCTTGTTTGCCA AGCAAATCTCATATCTGTATTTTGTTTTGTAAATTTTGTTTGTACACCTGTGGCATATTGACGG TACTAGATGCATTGCTTGTTATGCAATTTCCAAATTACAAGTTCTATGCTCTTCAGGCATTGAA CTAAGCTTTCTTATCATTTGTAGACTTCGGCATTGACAAGTCAATATTTATTAAACCCAAAACC TTTCACCTAACGGTTCTTATGTTGAAGCTATGGAATAAGGATCGCATTGCTAAGGCTTCTGATG TGCTCCAGGTAATTTCCGTTTCCAGATTATTGTGGTTTATTGTCTGAGATGACAGTGAGCAACT TAATGTGTTACCTTGTGGATACAGTCAGTATCGTCCCAAGTAATGGAAGCCTTGGAAAACCGAC CAATCTCCATACAACTTAGAGGTCTGGTGAGTTGCCATTCTCGAATAGTTCTGGCTGGAAGCTC ATTCATGCATACATCTAGAATAGCAAATGTAGATAATTCGAGCCAGAGAACAAAATATTTGTTC CTAAACACATTGTTGCTGCAAACCACATTTTAATACCTGTTTATAAAAGGTATCTGTACTGTTT CTCCCACCTTTTCCAATAATTCAAAGTTCCAATGAGAATATTTCATTCCAGACATGCATGAAAG GCTCACCAGCTAGGGCCAGGGTAGTATATGCTCCTGTGCTGGAAGTTGGTGAAGAGGGACGCCT ACAACGTGCTTGCA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_011424 						
					
						PMCS
						0.320650351

Conservation Information
Conserved circRNAs	osi_circ_011424
PMCS	0.320650351

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os01g0231900_circ_g.2

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