Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d043607_circ_g.1 |
ID in PlantcircBase | zma_circ_007804 |
Alias | zma_circ_0001310 |
Organism | Zea mays |
Position | chr3: 205003185-205004022 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d043607 |
Parent gene annotation |
hexokinase6 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d043607_T002:4 Zm00001d043607_T001:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.150274503 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
205003485-205003185(+) 205003967-205004021(-) 205003244-205003969(-) |
Potential amino acid sequence |
MFITMFPDSGGGPHHLGIESICSMYAALVPVPSITAATVSLSTYLPAANVPTVSLTSTVTSIST PWRLIALFNSATTSFPT*(+) MEVTVLVNDTVGTLAAGRYVDNDTVAAVILGTGTNAAYIEHMDSIPKWCGPPPESGNMVINMEW GNFRSTHLPLTEFDVALDAESLNPDEQIYEKLISGMYMGEIVRRVLLKMAQDASLFSDNVPLEL EVPYILR*(-) MLLFSQIMYLWNLRSHISLGRKGRSGRIKQGYQTPRS*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Ma et al., 2021b |