Detail information of Zm00001d043607_circ_g.1


General Information
CircRNA Name Zm00001d043607_circ_g.1
ID in PlantcircBase zma_circ_007804
Alias zma_circ_0001310
Organism Zea mays
Position chr3: 205003185-205004022  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d043607
Parent gene annotation hexokinase6
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d043607_T002:4
Zm00001d043607_T001:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATGTGGATATTTAAAGAAACTAACCAGTACTGTGACTTCCATATCAACTCCTTGGCGTTTGAT
AGCCTTGTTTAATTCTGCCACTACGTCCTTTCCTACctaaggatatatgggacctcaagttcca
gaggtacattatctgagaaaagagaagcatcctgagccatttttagcaagacccttcggacaat
ttccccca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAGGATATATGGGACCTCAAGTTCCAGAGGTACATTATCTGAGAAAAGAGAAGCATCCTGAG
CCATTTTTAGCAAGACCCTTCGGACAATTTCCCCCATATACATGCCAGAGATCAACTTCTCATA
AATCTGGGTTGGAAATAATGCTGCAGAGTCAATAAAAACCAAAGGGTAAAAGATCATAATCTGT
AGCATATGAAGGGCAATACCTGTTCATCAGGGTTCAAACTTTCTGCATCCAAGGCTACATCAAA
TTCAGTCAGTGGAAGGTGGGTGGACCTAAAGTTCCCCCATTCCATGTTTATCACCTGATAAAAA
GGTAAGCTAATGATGAACACCCTCATAAACATGTCAATGCTATCAATAAGGCAAAAACCTACAT
GCAAGAGTACAGTCAATGTAAGTCCCGTCTTTTGTATGTTTTTTACTTTGCAATCATAGAGAGA
AGTAACAGATGCTCACCATGTTTCCAGACTCAGGAGGTGGGCCACACCATTTAGGAATTGAGTC
CATATGTTCTATGTACGCTGCATTAGTGCCAGTACCCAGTATAACTGCAGCAACAGTATCATTA
TCCACATATCTCCCAGCAGCCAATGTCCCTACTGTATCATTGACCTGAAAAGGTAGCGTCTACA
TTTCAATATCTACAATATGGGCCCAGTTAAGACATGATCGGTACACAAGAAATTAATATCTTCG
ACCATTTACTAACAGTATTACTCCAATTGAGCGTTATGTGGATATTTAAAGAAACTAACCAGTA
CTGTGACTTCCATATCAACTCCTTGGCGTTTGATAGCCTTGTTTAATTCTGCCACTACGTCCTT
TCCTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.150274503
Functional Information
Coding potential Y
Potential coding position 205003485-205003185(+)
205003967-205004021(-)
205003244-205003969(-)
Potential amino acid sequence MFITMFPDSGGGPHHLGIESICSMYAALVPVPSITAATVSLSTYLPAANVPTVSLTSTVTSIST
PWRLIALFNSATTSFPT*(+)
MEVTVLVNDTVGTLAAGRYVDNDTVAAVILGTGTNAAYIEHMDSIPKWCGPPPESGNMVINMEW
GNFRSTHLPLTEFDVALDAESLNPDEQIYEKLISGMYMGEIVRRVLLKMAQDASLFSDNVPLEL
EVPYILR*(-)
MLLFSQIMYLWNLRSHISLGRKGRSGRIKQGYQTPRS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b