Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os07g0108300_circ_g.3 |
ID in PlantcircBase | osa_circ_032586 |
Alias | Os07circ00441 |
Organism | Oryza sativa |
Position | chr7: 447026-450573 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, SMALT, Segemehl |
Parent gene | Os07g0108300 |
Parent gene annotation |
Similar to Alanine aminotransferase. (Os07t0108300-01);Similar t o Alanine aminotransferase. (Os07t0108300-02) |
Parent gene strand | - |
Alternative splicing | Os07g0108300_circ_g.1 Os07g0108300_circ_g.2 Os07g0108300_circ_g.4 Os07g0108300_circ_g.5 Os07g0108300_circ_g.6 Os07g0108300_circ_g.7 Os07g0108300_circ_g.8 Os07g0108300_circ_g.9 Os07g0108300_circ_g.10 Os07g0108300_circ_g.11 Os07g0108300_circ_g.12 Os07g0108300_circ_g.13 Os07g0108300_circ_g.14 |
Support reads | 2/1 |
Tissues | leaf and panicle/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os07t0108300-02:9 Os07t0108300-01:9 |
Conservation Information | |
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Conserved circRNAs | osi_circ_006992* |
PMCS | 0.22412449 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
447136-450563(-) 450340-450563(-) |
Potential amino acid sequence |
MQPKGLAKRPMFSTASSFLKQLEYPLFQGQVSDKKKGAYSDSRGIPGIRKEVAEFIERRDGYPS DPELIYLTDGASKGVMQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLVPYYLEEEANWGL DFVNLRQTVASARSKGITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNI YQDERPFISARKVLFDMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKV ASIALSPNVPGQIFMGLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNF TEGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGCLQ*(-) MQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLVPYYLEEEANWGLDFVNLRQTVASARSK GITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARKVLF DMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKVASIALSPNVPGQIFM GLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP KAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGCLQ*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Lu et al., 2015;Chu et al., 2017 |