Detail information of Os07g0108300_circ_g.3


General Information
CircRNA Name Os07g0108300_circ_g.3
ID in PlantcircBase osa_circ_032586
Alias Os07circ00441
Organism Oryza sativa
Position chr7: 447026-450573  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, SMALT, Segemehl
Parent gene Os07g0108300
Parent gene annotation Similar to Alanine aminotransferase. (Os07t0108300-01);Similar t
o Alanine aminotransferase. (Os07t0108300-02)
Parent gene strand -
Alternative splicing Os07g0108300_circ_g.1 Os07g0108300_circ_g.2 Os07g0108300_circ_g.4 Os07g0108300_circ_g.5 Os07g0108300_circ_g.6 Os07g0108300_circ_g.7 Os07g0108300_circ_g.8 Os07g0108300_circ_g.9 Os07g0108300_circ_g.10 Os07g0108300_circ_g.11 Os07g0108300_circ_g.12 Os07g0108300_circ_g.13 Os07g0108300_circ_g.14
Support reads 2/1
Tissues leaf and panicle/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os07t0108300-02:9
Os07t0108300-01:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTCTTGATCATTCTGACCTTGGATAACCATCACGCCTCTCGATGAACTCGGCGACTTCCTTCC
TAATACCAGGGATACCTCGGGAATCACTGTAAGCACccttctttttgtccgaaacctgaccctg
gaacagtggatattccagttgcttcaagaagcttgaggcagtagaaaacatcggccgctttgcc
agcccttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCTTTTTGTCCGAAACCTGACCCTGGAACAGTGGATATTCCAGTTGCTTCAAGAAGCTTGA
GGCAGTAGAAAACATCGGCCGCTTTGCCAGCCCTTTTGGCTGCATCTATAGCTTTTGGTGGTAA
GCGTATTTGGGGGAAAGAGTACATAGCTCCTGCAACAACATAATTGGAAGAGCATTATTAGAGA
AGCTGCTTCATTTTCTCCTATTGCCATAAAGGAAGGGGCTCATATGTTAATGTCACCTTCTGTG
AAATTGCAGACAACATTTCGGCAACTATTGAAACCATCTGTCATCAGGCGTGCTCTCCTCCTCA
AAGACTCGAGGATAGACTTGCTGCAACATCATCAGGAGGCACATTATACATAGAACACTCGAAA
TTACTACCAGAGGAAATAAATACTGAATAACTGAATACCCGTGTAGGTCTTCTTTTCCTTGAAA
ATGCAGACATGGATTAAAATGATGAGAAGGGAAAGTATATACCTTTCAGCAGAAAACTTCAGAT
AAGAGATATCTCCAGGCTTAGGAGGGTTAACCATTAAACCCATCTGTAAATGACATTAAAACCA
TTTTTATTAACTTGTTAAAGCAAAGTAACATAACTTCAAGAAAATTAGTACAGTTGCAACTAAA
CTGTTTCAGGAACTAAGACCACATTGAATAACTCTAACACAAAAAGAAATGCATGTTTGCTATT
CCTTGTAAGGCTGTAGCCCACAGAGACATATTTTCAAGGTGCAGCATTATATGCTAATAAAGTA
AGCCATTGTGCTCATCACCAACATATGGACTGACCAAATAAGGGATTATTTAGATGCTCTCATC
TATTATTGTTGCAATCCATGGAAAAAAAATCTGGATATTTTTGGGCATCTCAGGGCACCGAAAT
TTTGAGTAATGCTCCATGGATAAATTAAGGATATCATATTTCCAGTTTTAAAGCTTGTGGTTTG
GCCACTGGAAGAACGGAAAGCTGTTTTAGATAATTGCACAAAAACAATGAATATTGTTTGACTT
ACAAAGATCTGCCCAGGAACATTTGGACTGAGTGCGATTGATGCAACCTTGTAGATCTCGTCTA
CTGTCTGTCATATGAAATGAGGAACGTAATTAGATCACAAGCAAACAGAAAAATGGTATCTGTG
CTACTATCCAAACTTCAAAGTAAAATCTTACATTACATGATCTATAACCAATCTTGTGCGAGTG
CTTAATCTTATCTAAAAGCTTAATATTTCAACTGCCAAAGGCTCTTCAAAATTTGTCAAACATT
AAGTTTACAGTTTGGAAATTGGACAAACCTAAGAGTTGCAAACTTGCAAACTCCAGTTTACGTT
GTTCATACTCAAGTTTCTGAGACTGACAAAGACCACTCTAGTAAGGGAATATTTCGGTGCAACA
AATGTAACTACACCAACCTAGTTAGCAGGATGGGCTACTGGATTATATTACATAGTTCAACATA
TACACTATTTTACTGTGGACCAAATATAACAACAAGAAACTAGCATATTCTCTATTAGACTTTG
CAACATGGCATGAAGAATGTAACATCTTTTCTAGTATCTGCATCTACATTTTTGTGTAGCTGCA
TTCTATAAATCTATATAGTAAAGACTAGAAATTTGAATCACGATCTTTTGAGATCAATCACATA
TTCTATAATGGCATCACCTTGGGAGGAAGATTTGTCATTTCAAAATACCCTCCACGTTGTCCAC
ACTCCCCCCAATATCCTTTTGACACAGTATGGAAAGAAACCAGCTGAACTTCCCTGCTCATAGG
AGGACCCATGTCAAACAGAACCTGAAGAAATTGAGAAAGTCCATGTTAACATCAGCAATCAGAA
TAGTTTACAATTGATCAAAGTAATCAATATTAGGGCATAAACTCATGTATTAGTTATTTATAAG
TGAAAAAAACTATTAAATTTCCACATCAAAAGGAGCAGCTATTAATTAACTTGGTTCCATCTGG
TACTTGAAGGCAACTTATTATGTTCATTTTAATTTTTGGTATACCACATGAAAGTAAAAGGTTG
GGAAATGTTGTATTCATGATAAAGCATCACGGGTCAGAAATCAAAAGTTACCTTTCTAGCACTT
ATAAATGGGCGCTCATCTTGATAAATGTTCTGTTGATAGACTTCATCTGCAAGCAGAACTAAGT
TCTCATGGAAGCAGAATTTGAGAAGTTCCTTTATGTTTCCTTCACTAAGGCATTGGCCAGTAGG
GTTTCCTGGGTTGATAATCACCATTGCTCGAACCTATGGAAGAAAAAATAACATCAAAGCTGAA
TACAGATAGTATAAATGCTACATTTTTATGCAAACAGCATGATTGAAAATAAAAGAAAGGGGAA
GAAATATAAGCATGGAAAAGAGGAACCAAAACAAAGTGTACTGATGGACATAAATCATCAAGTG
GGCATCTTTTTGCATGCTAGATAATGACTAGCAAAGTGTTCCTCCAACCTAACGGCTAGCGTTT
CTGTCCAAGAGCTAGCAGAGGTTTTAGGTGAGCCAGTGAAGATAACATGAGGATATGATTATCG
GAACTGGTTAAGAAAAGGATAGCTTTCCACCAGATGCAAAAACAATATGTACCCCTTACTGCTT
ACACAGGAGTATAACATTACAGAATGAGTGTGGTTCGGTGGTTCCTCTCCAAGGGACATGTTTC
AATCATACATGCTTTAGAACTTCATATAAGCCTTTCTATTTTTGATGAATTATTGAACAAAGCC
TTATAGAAATGACTCAAAGATTTGAACTGATCAAGAGAACACGCCGATGGCCGGTGGTGAGGAG
GTTGATTCCAGTGACCATTTTCCACTTAGAGAGACTTGAACTCATCAATATTACATTGATATTG
CTATTTTACTTGGGGTATTGTTTTTTGTATGCAGGAACATGGTAATGAACTCATTTACAGTAAT
TGCATGAATGACTGAATAAGATACCGTGACTCCCAAATTTCTGTAAAACACTCACAGTGATTCC
CTTTGACCGCGCTGACGCCACAGTCTGTCGGAGATTGACGAAGTCAAGTCCCCAGTTAGCCTCT
TCTTCTAAGTAGTATGGCACGAGAGAACCACCAAAGAGGGAAATGGCAGCAGAATAAAGCGGGT
ATTGTGGAACAGGAACCAGAATCTGCGAAGGAAGGTACACATCTCGGTTGAATCAGATGGGGTG
AAATTAGTCTTCAGTAGAAATAGCACTGAATTAATCAGGGCAAATATAGCTTTTAAGGAATAAT
AACATACCCCATCTCTCTCATTTCTGATAATGGTATTCAGCATTTGCATCACACCTTTGCTGGC
ACCATCTGTGAGGTAAATAAGTTCTGGATCACTGCAATAGGTATAGGATACAGGTGTGAGAATA
TGGCCCAAGAAAGCTATGATGTAAAAGAACACCACCAGTTGAGACTTGTCATGAGTACTCTTGA
TCATTCTGACCTTGGATAACCATCACGCCTCTCGATGAACTCGGCGACTTCCTTCCTAATACCA
GGGATACCTCGGGAATCACTGTAAGCAC
Conservation Information
Conserved circRNAs osi_circ_006992*
PMCS 0.22412449
Functional Information
Coding potential Y
Potential coding position 447136-450563(-)
450340-450563(-)
Potential amino acid sequence MQPKGLAKRPMFSTASSFLKQLEYPLFQGQVSDKKKGAYSDSRGIPGIRKEVAEFIERRDGYPS
DPELIYLTDGASKGVMQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLVPYYLEEEANWGL
DFVNLRQTVASARSKGITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNI
YQDERPFISARKVLFDMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKV
ASIALSPNVPGQIFMGLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNF
TEGAMYSFPQIRLPPKAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGCLQ*(-)
MQMLNTIIRNERDGILVPVPQYPLYSAAISLFGGSLVPYYLEEEANWGLDFVNLRQTVASARSK
GITVRAMVIINPGNPTGQCLSEGNIKELLKFCFHENLVLLADEVYQQNIYQDERPFISARKVLF
DMGPPMSREVQLVSFHTVSKGYWGECGQRGGYFEMTNLPPKTVDEIYKVASIALSPNVPGQIFM
GLMVNPPKPGDISYLKFSAESKSILESLRRRARLMTDGFNSCRNVVCNFTEGAMYSFPQIRLPP
KAIDAAKRAGKAADVFYCLKLLEATGISTVPGSGFGQKEGCLQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015;Chu et al., 2017