Detail information of Os01g0876800_circ_g.2


General Information
CircRNA Name Os01g0876800_circ_g.2
ID in PlantcircBase osa_circ_005062
Alias NA
Organism Oryza sativa
Position chr1: 38048594-38052638  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os01g0876800
Parent gene annotation RNA-binding region RNP-1 (RNA recognition motif) domain contain
ing protein. (Os01t0876800-00)
Parent gene strand +
Alternative splicing Os01g0876800_circ_g.1
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os01t0876800-00:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACTTCTCAACTGTGGCTTCTACAGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGC
CATTGTCTCTTGCAGCGAGTCCTCAAGCCCAAGCAGgttaccttccgggacccggatgcggcga
tgagggcttgcgttgatcccgcgccggtgatcgacgggagaagggctaactgtaatctggcttc
ccttgggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTACCTTCCGGGACCCGGATGCGGCGATGAGGGCTTGCGTTGATCCCGCGCCGGTGATCGACG
GGAGAAGGGCTAACTGTAATCTGGCTTCCCTTGGGGTTCAGAGATCTAGGCCTCCAACCCCACA
GCATGGTTAGACATTTGCCATTATCTCACCAGCTAACAAAAGCAACATAGAACACACAGTTAGC
TAGCTTGCTTGAAAGCCTTCGATGACAACTTCTTATGAGTTGAAAACAGCCCAACACCAAAAGC
TCTTGAAAAAGAGAAGTGATAATCATTATAGATGCACTAACTCTGGCATTTTCTATGATTTCCA
CATATAGTTTCATGATCGCAAACTTAGCTGTTATGATTTTATGCGCAAAAAAGTTCCTTCCTGC
CAATAGAATAAATAAGAGCTTAAAGAACACGACATCAAGTTTGCCTAACTTTGCTAATTGGCTA
AGCCTTGTTAGATGAGGACCTTTTAAATGCATTGGTTTAGCTTAGTGCTAACTAATTTTTACTA
AGTACAGAGCATACATTTTGACAGGACTGCCCTTTTACCTAGCAGCAAAAAAATCCATAGTCTT
GACGATATTATCTTGGAATTTAGTTACTGGAAAAGTAGATAAGGAGGACGAACAACATTAGCAG
TACAAAGATGTTAGTTATCCTTGAAATAAGTGCCTTGTTTCGGATAATGCGCTATACTAATTAT
AAATCCTAGGCTCAGATAATAAACTATAGGATCAAACCTTAACCCTAAATTAATCGGGACAGAT
TCAGAGAATCTTTTACTTCTATTATGTCGTCTTGCAATTCAGCGACCGAAGAATGGTTTGACCA
TCTCTGTGAATAAACTCATTAGTGGTGCATCAGAACAAGTGCAAGGCTGCTTTCAAGTGTCTTT
TTGCAGATAATGCTAGCAAGGCAATGTGGGTAAATTTGCTCTAATTTTCTTGACGATGTTGCTA
CAGGAGGGGCTAGGAGCTTTAGGGTGATGAAGTCCTTTAGCCAGCAGGCAGGGATCCAAGGTGG
TCTGGGCGCAGCTTTTCCTTCTCACGCCACCTTCCCCCATTATGCTATCCCACAAGGTCTCCCT
TACCATGTCTATGGGTAAGTTCTCTCTCTCTCTCTCTCCCCCCTTAAAGTTCCCAAGGACCAAC
TATGACGGGGGGCTTATCACATGCATGACATGTGCATCATGACATGCCGCCTTGGTCAATGGTG
AATGGCATGGAAGCTTTTTAGCTTGCACCCCCAAGGCCCCAACCCCTCCTCTCTCACACACACA
CAGTGGCAGGCTGGCACTGGCAGTGCATGCTGATCCAGTGGCACATGAAAGGGCAGTCTTGTTA
TCTCCCTTAGACTGCAAGCACGCCCTACTCTCCCTCTGGCGCAAGCTATTAGATGCTTAGTCGA
GTAGATGATTTCATAACCATGATTGATACAAAATTGATATTATTTCTTCTCCTTCCCTTAACTA
CTGCAGGTACTCTCCCTATTCTCCAGACTACAGTTATCCCACAGTAAGTTCCTCTTGCAAATCC
AGCAAGTACTATTAGTTGGATAAAAAATATAATAGGATGCTGATGTTCTTATTATTTAACTGAG
ATCAGTTTCTGTGTGTGTTGGGGGTGGGTGCGGGGACAAATATTAAGCATATCAATTTTAAGCT
AACATACCATTGTGACAATGCTTATAGGTGTACCAGAAATTAGTTTTGTAGTATGCATTTGCAA
TAGCAATCAAGATATGATACATGCTGCATAGAAAATAGTAGCACATAAACATCTAATAGCAAAA
CAAGACATTGCACGAAATTAAATGCTGCTACAGGAACATATACTATACTGCTATAGCAAACAGT
AACCCAAAGAAGGTGAGAAATGCTAAGCATATTAGCCTCTTCAACCGCGAGCTTTCAAGCCAAC
CTGGACGGTTTGTCTCCATACTCTAGTGTACTAAATGAAATCTGTCTTCATAGCAAATCCTACA
CAGGTTTTACTTACAAACTGACATCCTGCATGCACCGTCACTTAAAAACTGGCATAGCATGCTT
GTCAAACACTCAAACTTGTAAATCATGTACAGATCCCATTAAAATGTTACTAATGGAAAGCACA
TAACTAGCTAATACAAGCCCACAGCCCCACACCAAATAAACATTAGTGTGTAGCACTACCCCAG
TACCCCTATATAAATATAATAACATGAATATACAAAAAGAAAAGCTATCAAAATAATCACTTTT
GCTACTAGAAAACCAAAAATCCTAGCAATTTCAATACATTGAACCATTTGAAATACCACAGGCT
GATAAAGATTTTCCTTTACCAGTAGTTTTTACCTGTCAGTTGGCATGAGTTAGCAGCTCTTAAG
AATATCCATCGCCTGCCTAGCTTCCTCCATGTTCAGTGACAATATTATGTGCTATTGTGCTGAA
AGGCCCTAAGCCATGCATCCTTTCAAAACCATTCCCTTCACGTGTAACAGGTATTATAATGTTG
AATTTCTGAGTCCAGCTTCGCTAATGGATATGAGGTTGTTTTCCAACCCCCCTCAAACAGTTGT
CCCATATGAGATGAGCCCAGTCCAAACAATGTCCATGCCTGCATTAAAAAAAATCATCAATTAT
CCATCCTGAGCCTCCATCAAGTATAGTGCCTTATGGTCCTAGCAGCTTCTATCTTACCTGGTAC
AGGCGCACATGACATGGGCCCTAGCTTGTCCAGACCAAACCTGTTAAACACTGGGTCCATCCTC
CCATCAGCTAGACCCCTTTGTTAGCCAAATAAACTTAGTGACAGCACATGCGTGGGTCCACAAT
TCTATTCAAAGCTATACCTCTGTTTGGCTCCATAAAGACCTAAGTCACCTATTGGGCCTTTGAT
GCATGGACCTAAATGTAGTCCAGAATACAGGTTTTTGCAGTTAGTGCGCCAATTTAGCTTTGTC
CCAGATTGATGCACTGCATATGACAGGAACAGTCAAGTGTCTGTCTAACATGTAATCTGTTGCA
GAGGCACATGATTTTCATGAAGTCAAATAGGAAGCACAGAAACTTGGTATTTCAATACTGTTTG
ATAGTTTACATGAGCTAGAAAAAAAAAACTATTTGAGGTATACCACTCTAATAACGGGACTATA
GCCTGCCCCCTTCTCCCCCTCCTCTCTCTCTCAGTTCCAATTTCCAAACCATGCATTTTGACAC
CATCCATTTACTAGTGTTGGAGCGAGGAAAAAACAAAATAAGTTACTTGTTTGGATATAGTAGG
ATATTTTCTAGAATAATGCAACAGAACACCTTTTAAAAGTAGGTAAATTGTACATCTGCATAGT
GACTGTGATACCCAGAATTAGATTATTGGTTATGTACTGTAAAAGGCATATCCAAAATATTAAA
ATGACAATTAAACCAAATTGTTGCCTTTACTTTAACAGTTGCTAACGGTTATGCACTTACGCCT
TAGCCGCCTTAATATAGTACTATCAGAGTCACTGATTCAAATTCATTAGTAAATTTTCAACAAG
AAGCAAGAAAACTTAACAGAATATGCAAGCACTTAATTCAACTTTTTACATAAAGTTACAGATG
CTAAAATGCATCTCTTGCAAACCTAACAGATTCAAGCTGCATATAGGTATGTTTTGAATGTAAT
GTGAACTGAATTATAACAGAGTTCCTAACATACATCACAGAATTATATCAGAAAGAACAAACGT
CATGGAATCAAGACTTATCTTCTCCTTGTGCTGTTAATTAGAACTACTACAACATCTACGGAGG
AGCTCAATACCCATTTTATGGAGCGGCGGCGGCGGCGGCAGCAGCAGCAGCTGGCATGGTGACT
GGAAGCAGCCCCTTTTATCCATATTTCCAGTTTGGGCAATCAGGAAGCACTACAACCAACTATG
CAAGTGGACAAGGCTACAACTTGCAATACCCACAGATGTTTCACTTCTCAACTGTGGCTTCTAC
AGCTGCTGCTGTAACAGGTTTTGCACAGCAATATGGAGGGCCATTGTCTCTTGCAGCGAGTCCT
CAAGCCCAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.10705624
Functional Information
Coding potential Y
Potential coding position 38048622-38048634(+)
38052595-38048634(+)
38049689-38052560(-)
Potential amino acid sequence MRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARSFRVMKSFSQQAGIQGGLGAAFPSH
ATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQYPFYGAAAAAAAAAAGMVTGSSPF
YPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAAAVTGFAQQYGGPLSLAASPQAQAG
YLPGPGCGDEGLR*(+)
MEGHCLLQRVLKPKQVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARS
FRVMKSFSQQAGIQGGLGAAFPSHATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQ
YPFYGAAAAAAAAAAGMVTGSSPFYPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAA
AVTGFAQQYGGPLSLAASPQAQAGYLPGPGCGDEGLR*(+)
MVRETLWDSIMGEGGVRRKSCAQTTLDPCLLAKGLHHPKAPSPSMLWGWRPRSLNPKGSQITVS
PSPVDHRRGINASPHRRIRVPEGNLLGLEDSLQETMALHIAVQNLLQQQL*(-)
Sponge-miRNAs osa-miR3979-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017