Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os01g0876800_circ_g.2 |
| ID in PlantcircBase | osa_circ_005062 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr1: 38048594-38052638 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer |
| Parent gene | Os01g0876800 |
| Parent gene annotation |
RNA-binding region RNP-1 (RNA recognition motif) domain contain ing protein. (Os01t0876800-00) |
| Parent gene strand | + |
| Alternative splicing | Os01g0876800_circ_g.1 |
| Support reads | 1 |
| Tissues | shoot |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os01t0876800-00:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.10705624 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
38048622-38048634(+) 38052595-38048634(+) 38049689-38052560(-) |
| Potential amino acid sequence |
MRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARSFRVMKSFSQQAGIQGGLGAAFPSH ATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQYPFYGAAAAAAAAAAGMVTGSSPF YPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAAAVTGFAQQYGGPLSLAASPQAQAG YLPGPGCGDEGLR*(+) MEGHCLLQRVLKPKQVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARS FRVMKSFSQQAGIQGGLGAAFPSHATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQ YPFYGAAAAAAAAAAGMVTGSSPFYPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAA AVTGFAQQYGGPLSLAASPQAQAGYLPGPGCGDEGLR*(+) MVRETLWDSIMGEGGVRRKSCAQTTLDPCLLAKGLHHPKAPSPSMLWGWRPRSLNPKGSQITVS PSPVDHRRGINASPHRRIRVPEGNLLGLEDSLQETMALHIAVQNLLQQQL*(-) |
| Sponge-miRNAs | osa-miR3979-5p |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |