Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0876800_circ_g.2 |
ID in PlantcircBase | osa_circ_005062 |
Alias | NA |
Organism | Oryza sativa |
Position | chr1: 38048594-38052638 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os01g0876800 |
Parent gene annotation |
RNA-binding region RNP-1 (RNA recognition motif) domain contain ing protein. (Os01t0876800-00) |
Parent gene strand | + |
Alternative splicing | Os01g0876800_circ_g.1 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os01t0876800-00:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.10705624 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
38048622-38048634(+) 38052595-38048634(+) 38049689-38052560(-) |
Potential amino acid sequence |
MRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARSFRVMKSFSQQAGIQGGLGAAFPSH ATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQYPFYGAAAAAAAAAAGMVTGSSPF YPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAAAVTGFAQQYGGPLSLAASPQAQAG YLPGPGCGDEGLR*(+) MEGHCLLQRVLKPKQVTFRDPDAAMRACVDPAPVIDGRRANCNLASLGVQRSRPPTPQHGGARS FRVMKSFSQQAGIQGGLGAAFPSHATFPHYAIPQGLPYHVYGYSPYSPDYSYPTNYYNIYGGAQ YPFYGAAAAAAAAAAGMVTGSSPFYPYFQFGQSGSTTTNYASGQGYNLQYPQMFHFSTVASTAA AVTGFAQQYGGPLSLAASPQAQAGYLPGPGCGDEGLR*(+) MVRETLWDSIMGEGGVRRKSCAQTTLDPCLLAKGLHHPKAPSPSMLWGWRPRSLNPKGSQITVS PSPVDHRRGINASPHRRIRVPEGNLLGLEDSLQETMALHIAVQNLLQQQL*(-) |
Sponge-miRNAs | osa-miR3979-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |