circRNA
Detailed infomation of each circRNA
Detail information of orai.001G168700_circ_g.1
| General Information | |
|---|---|
| CircRNA Name | orai.001G168700_circ_g.1 |
| ID in PlantcircBase | gra_circ_000084 |
| Alias | Chr01:24032309|24036606 |
| Organism | Gossypium raimondii |
| Position | chrChr01: 24032309-24036606 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.001G168700 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Gorai.001G168700.1:8 Gorai.001G168700.2:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.515106759 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
24032372-24036603(+) 24032341-24036443(-) |
| Potential amino acid sequence |
MLGGSNFPSSPGSMQPPQQSRKFFDLAQQHASAQDSQNRSQGVERQTLTPFQQAYYQYAYQTAQ QQKTLLAQQQAKMAILGSASVKDQDMRIGNFKILELTSMQAANQAQASSSKNPSEQLGRVEKQI EHGPQSATDQRNEPKPPTQGTVTGQLMHGNVLRAMQAQQAQQTVQNTGHDQLAMAAQLQSWALE RNIDLSQPANANLMAQLIPLMQSRMAAHQKTNESNMGSQSSPVLVSKPQTTSPSVPSDSSPRGC SSSDISSQSGSAKTKPTALPSTTSSTGVVNNADNIAMLQLAIRGQDKQVPPREPLVLGSEMPSV RPSQSSPNISLSGNPSLLTKNSLGGTETAETQYRKQLNENFPLPSAPNNDGGSVKNLPAQGKAA MQMPQQRFGFTKKQLHVLKAQILAFRRLKKGEGTLPHELLRAIVPPPVELQQPQLPPLGGNNQD RNGGKIVEDPQKYSDSKEKVSQAGPSTNGHNIVKEEAYRGDDKATSSTAHMQGVSSVAKEFSST LPAGKEEQQGSVISAKSDQEVEHSLQKTPARSDFSVDRGKAVAPQLAASDGGQVKKPVQANSAP QPKDPGSARKYHGPLFDFPFFTRKHDSNGSVMPNINNNLTLAYDVKELLFQEGVEVFSKKRSEN LRKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLIDVQARLRDEVDQQQQEITAMPDRPYRKFV RLCERQRMELARQIQATQKALREKQLKSIFQWRKKLLEAHWAIRDARTARNRGVAKYHERMLRE FSKRKDDDRNKRMEALKNNDVERYREMLIEQQTNIPGDAAERYEVLSSFLTQTEEYLHKLGSKI TAAKSQQEVEEAANAAAVAARLQGLSEEEVRIAAACAGEEVMIRNRFMEMNAPRDGSSVSKYYN LAHAINERVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLM EFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGAKDQRSKLFSQEVLAMKFNVLVTTY EFIMYDRSKLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPLQLLRKPEVNEA ILAYQASGLQGMLGGSNFPSSPGSMQPPQQSRKFFDLAQQHASAQDSQNRSQGVERQTLTPFQQ AYYQYAYQTAQQQKTLLAQQQAKMAILGSASVKDQDMRIGNFKILELTSMQAANQAQASSSKNP SEQLGRVEKQIEHGPQSATDQRNEPKPPTQGTVTGQLMHGNVLRAMQAQQAQQTVQNTGHDQLA MAAQLQSWALERNIDLSQPANANLMAQLIPLMQSRMAAHQKTNESNMGSQSSPVLVSKPQTTSP SVPSDSSPRGCSSSDISSQSGSAKTKPTALPSTTSSTGVVNNADNIAMLQLAIRGQDKQVPPRE PLVLGSEMPSVRPSQSSPNISLSGNPSLLTKNSLGGTETAETQYRKQLNENFPLPSAPNNDGGS VKNLPAQGKAAMQMPQQRFGFTKKQLHVLKAQILAFRRLKKGEGTLPHELLRAIVPPPVELQQP QLPPLGGNNQDRNGGKIVEDPQKYSDSKEKVSQAGPSTNGHNIVKEEAYRGDDKATSSTAHMQG VSSVAKEFSSTLPAGKEEQQGSVISAKSDQEVEHSLQKTPARSDFSVDRGKAVAPQLAASDGGQ VKKPVQANSAPQPKDPGSARKYHGPLFDFPFFTRKHDSNGSVMPNINNNLTLAYDVKELLFQEG VEVFSKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLIDVQARLRDEVDQQQQEIT AMPDRPYRKFVRLCERQRMELARQIQATQKALREKQLKSIFQWRKKLLEAHWAIRDARTARNRG VAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLIEQQTNIPGDAAERYEVLSSFLTQT EEYLHKLGSKITAAKSQQEVEEAANAAAVAARLQGLSEEEVRIAAACAGEEVMIRNRFMEMNAP RDGSSVSKYYNLAHAINERVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKT VQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGAKDQRSKLFSQEVL AMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRCQRRLLLTGTPL QLLRKPEVNEAILAYQASGLQGMLGGSNFPSSPGSMQPPQQSRKFFDLAQQHASAQDSQNRSQG VERQTLTPFQQAYYQYAYQTAQQQKTLLAQQQAKMAILGSASVKDQDMRIGNFKILELTSMQAA NQAQASSSKNPSEQLGRVEKQIEHGPQSATDQRNEPKPPTQGTVTGQLMHGNVLRAMQAQQAQQ TVQNTGHDQLAMAAQLQSWALERNIDLSQPANANLMAQLIPLMQSRMAAHQKTNESNMGSQSSP VLVSKPQTTSPSVPSDSSPRGCSSSDISSQSGSAKTKPTALPSTTSSTGVVNNADNIAMLQLAI RGQDKQVPPREPLVLGSEMPSVRPSQSSPNISLSGNPSLLTKNSLGGTETAETQYRKQLNENFP LPSAPNNDGGSVKNLPAQGKAAMQMPQQRFGFTKKQLHVLKAQILAFRRLKKGEGTLPHELLRA IVPPPVELQQPQLPPLGGNNQDRNGGKIVEDPQKYSDSKEKVSQAGPSTNGHNIVKEEAYRGDD KATSSTAHMQGVSSVAKEFSSTLPAGKEEQQGSVISAKSDQEVEHSLQKTPARSDFSVDRGKAV APQLAASDGGQVKKPVQANSAPQPKDPGSARKYHGPLFDFPFFTRKHDSNGSVMPNINNNLTLA YDVKELLFQEGVEVFSKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEEKKLRLIDVQARLR DEVDQQQQEITAMPDRPYRKFVRLCERQRMELARQIQATQKALREKQLKSIFQWRKKLLEAHWA IRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLIEQQTNIPGDAAER YEVLSSFLTQTEEYLHKLGSKITAAKSQQEVEEAANAAAVAARLQGLSEEEVRIAAACAGEEVM IRNRFMEMNAPRDGSSVSKYYNLAHAINERVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNG ILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPSVSCIYYVGAKD QRSKLFSQEVLAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRESVLARDLDRYRC QRRLLLTGTPLQLLRKPEVNEAILAYQASGLQGMLGGSNFPSSPGSMQPPQQSRKFFDLAQQHA SAQDSQNRSQGVERQTLTPFQQAYYQYAYQTAQQQKTLLAQQQAKMAILGSASVKDQDMRIGNF KILELTSMQAANQAQASSSKNPSEQLGRVEKQIEHGPQSATDQRNEPKPPTQGTVTGQLMHGNV LRAMQAQQAQQTVQNTGHDQLAMAAQLQSWALERNIDLSQPANANLMAQLIPLMQSRMAAHQKT NESNMGSQSSPVLVSKPQTTSPSVPSDSSPRGCSSSDISSQSGSAKTKPTALPSTTSSTGVVNN ADNIAMLQLAIRGQDKQVPPREPLVLGSEMPSVRPSQSSPNISLSGNPSLLTKNSLGGTETAET QYRKQLNENFPLPSAPNNDGGSVKNLPAQGKAAMQMPQQRFGFTKKQLHVLKAQILAFRRLKKG EGTLPHELLRAIVPPPVELQQPQLPPLGGNNQDRNGGKIVEDPQKYSDSKEKVSQAGPSTNGHN IVKEEAYRGDDKATSSTAHMQGVSSVAKEFSSTLPAGKEEQQGSVISAKSDQEVEHSLQKTPAR SDFSVDRGKAVAPQLAASDGGQVKKPVQANSAPQPKDPGSARKYHGPLFDFPFFTRKHDSNGSV MPNINNNLTLAYDVKELLFQEGVEVFSKKRSENLRKIGGLLAVNLERKRIRPDLVLRLQIEEKK LRLIDVQARLRDEVDQQQQEITAMPDRPYRKFVRLCERQRMELARQIQATQKALREKQLKSIFQ WRKKLLEAHWAIRDARTARNRGVAKYHERMLREFSKRKDDDRNKRMEALKNNDVERYREMLIEQ QTNIPGDAAERYEVLSSFLTQTEEYLHKLGSKITAAKSQQEVEEAANAAAVAARLQGLSEEEVR IAAACAGEEVMIRNRFMEMNAPRDGSSVSKYYNLAHAINERVIRQPSMLRAGTLRDYQLVGLQW MLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHNWLPS VSCIYYVGAKDQRSKLFSQEVLAMKFNVLVTTYEFIMYDRSKLSKIDWKYIIIDEAQRMKDRES VLARDLDRYRCQRRLLLTGTPLQ(+) MASFTSGFLSSCNGVPVRSKRLWQRYLSRSRAKTDSLSFIRWASSIIMYFQSILESLDRSYMMN S*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |
