Detail information of Os01g0901550_circ_ag.1


General Information
CircRNA Name Os01g0901550_circ_ag.1
ID in PlantcircBase osa_circ_040742
Alias NA
Organism Oryza sativa
Position chr1: 39256357-39260923  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRI-long
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTGATGAAGAAGCTGGGCAACTGCCAATGGCTTTTGTAGTGAGGCAACCGGGTGCATACCTT
ACCGAGCAACAAGTCATGAACTGCGTCGCTAAACATgttgcgccatacaagaaggtgcgacgag
tggcttttgtcactgcaataccaaaatcgcctgcagggaagatccttcggcgggagcttgtgca
gcaggccc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 232
Transcript exons: 39256357-39256485,39260821-39260923
GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAG
GGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAA
TATATCCTGATGAAGAAGCTGGGCAACTGCCAATGGCTTTTGTAGTGAGGCAACCGGGTGCATA
CCTTACCGAGCAACAAGTCATGAACTGCGTCGCTAAACAT

Genomic sequence GTTGCGCCATACAAGAAGGTGCGACGAGTGGCTTTTGTCACTGCAATACCAAAATCGCCTGCAG
GGAAGATCCTTCGGCGGGAGCTTGTGCAGCAGGCCCTGTCGATGGGTGCCTCCAAGCTTTGAAA
TGTGTAATTTGCTGCAGTAGTCTAGTAGAGAATATTTTGCTTACATATAGTGAACTGGAGATTT
ATAGGCCTCAAGCTTTACCAATTAACACCTCCTTTGGAGGCTGAGAAATTTTGGGGGGAATTTT
GGAGGACTACGAAAATTATGTAAATTCCCATGTTCCAGAGCTAGTATATTTTAGCTCAACAACA
CGGCCTCCAAATGTCCAATCATATTTCCATGTCTACACCGTATATTTTCTGCATGGATTTACAT
ATGGCAGTTTTCCATTTTGATTGTAAATTGTAAATAGTGTAGAATCTGTAATATGTTTTTTGGA
CCGAGGTAGAATGCAGCTATTGGATTGAGATCCTCTACCGTAACTTTCATATGACGTGGTGGCT
GACATATTGGCCCGGAAGTGGTGGAGTCGACATACATGGTGGCTGAAATGTCGGTCCAGAAGTG
GTGGAGTCGACATGTCAATTACGGTGAACAGTAACATCGGAGGATCCGCTTCCACAGCCATTCC
TTGCACATGGATGGGCACCATGCATCACCATCTGGCAATCATCCAAGAGCCAACACCTTCAATA
CCTTCTCCATTCGCAGACATTTTTTTTTTCGCGAACGCTCTCCATTCGCAGACAGACAGGCGGC
GAGTGGCGACATGCGAGGGAAGCCCGATATGGAGGAGGAGGAGGAGGCGAGCAACTCACGAGTC
ACGTCAGAAAGCGAGAGAGAGATCAGTGGGCATCACCGTGGAATAATAAATGAATAATCCTCCT
TCCCGTTGCTTCAGAACGGAGGCCAAGATAGATGAGTCCCTGTGGTTAAAAGTGGTATAAACGA
ACAGTGAAGCTTGAAGGCGATGTTTTTGGCAACCAAGTGTGCAATGAGAATCACGTTGGGCCGC
TGCATGGTTCCAGATCGCTCGCTGTCGCCGGAACACGCCAGCGTCCTCGCTGTCCTCACTCCCA
CTCGCTCGCTCTCGCCGTCGCCCGCCACCTGTCAGGCTAGCTGTAACCTCAAATGAAAGGCACC
CTTTAATTTGTAGGAAAGACATAAAAATTGTAGAGTATTTTAATCCTATAGAAAAATCTCCTAT
AAAAATATTTAAACAAAGGATTGAGTTATATCATATCTTTTGAAGTTCCTTTAAAATAGACAAT
TCTATAGTGATTTTAAAGCAAAACTTAGCAAGAGCTTTAACCTTTTAGAAATTTCTTTTTTCAT
GATCCAATCGAACGGTCTGGTTTTTCTGCGATTTATAATCCTCCATTTTGTATTTGTGCGTTTT
ATAATCCTCCATTTTAGACTGAATCTGTATTTTTTCTACTCCTATATTTTTTTTCCATTACCAC
GATCCAAATAGGCTGCAGAGTCCAAACGCTCTCACTCTCCCACTCGCTCGCTCTCGCCATCGCC
GTCGCCGGAGTCTGCAGGGGCGCCGCACACCGCGGCTTTATCTCCGGAGTGTCCGACCCCCGCC
ACGGCCACATGTCCAAACGCTCGCCTCCGCCGCAGCCCGCTCACATCCCGATGGCCGAGCAGCG
GTGGCGGCCGCCGTACCCGTACGCGTCCTCCGCCGCCGGCGGTGGCGGCGTCGACCGTCGCAGT
CGCAGCGGCTTCTGCGCCGCCACGCGGACGTTCCACAGCCTCCGCTCCGTGGGACCTCTCCCGC
CGGAGGAGCTCCCGCTGACGGTCGCCGCGTACGCGTTCTCGCTGCTGTCCTCGGCGCCGCCGCT
CGTCGTCGCCGGCCGGGGCCCCGCGCTCGTCGACGCCGCCACGGGTATTGCCGTCTCCTACCCG
GCCTTCGTCGCGCGGGTCCGCTTCCTCGCCGGCGGCCTCTGGTGCTCCCTCGGGCTGCGTCCCG
GGGACGTCGCGCTCGTCGTGAGCCCGTCCTGCCTCGACGTCGCCGTGCTCTACTTCGCGCTCAT
GTCCATCGGCGTCGTCGTGTCGCCCGCCAACCCGGCCTCCACCGCCGACGAGTACGCGCATCAG
GTCAGGCTATCCAGGCCAGCCATCGCGTTCGTGGCCCCCGAGGTGGCCGCGAGGTTGCCACGCC
ATGTGAGCCGCGTCGTCATCGGGTCGGAGGTGTTCGACAGGCTAGCCTCCGCCTCCGCCGCCGG
CGGATGGGCGGCGCCTCCGGCGGTGGCGATGAAGCAGCCGAGCACCGCGGCGTTGCTGTACTCG
TCGGGCACCACCGGGCGGGTCAAGGCGGTGGCGATCACGCACCGCAACCTCATCGCGCAGATCA
GCGCGTACAACGCGATACGTGAGACGGTGGCGAGGGAGGCCGCCACCGACGCGGGCAAGGGCAA
GCCGCCGCCGCCGTCGCCGTCGCCGCCGGCCGCCGTGACGCTGTTCCCCTTGCCGCTGTTCCAC
GTGATGGGGTTCGGGCTGCTGACGCGCACCATCTCGTCGGGGGAGACGGCCGTGGTGATGCGCC
GGTTCGACCTCGCCGCCGCGGCGCGCGCGGTGGAGCGGTACCGCGTGACGAAGCTGTCCGCCGC
GCCGCCGGTGGTGGTGGCGCTGACCAAGTCCGACGAGGCGCGCCGCCGTGACCTCTCGTCGCTG
GTCGCCATCGTCGTCGGCGGCGCCCCGCTGGGCCGCGAGGTCTCCCAGCGCTTCGCCACCGTCT
TCCCCAGCGTGCAGATCGTCCAGGTTAACATAATCCTCGAATTATTAATTAGTTAACTATAAGA
GTAAATTTTATAAAACCCCAACTATTATGATCTAAGTTGCACAAAATCACAGAAATTTTGACAC
GTGGCATATAATGCCAGGTATTATGGTACTAAAGTTTCTCAAAACCACACCGTTAAATGTTTTA
CCCTACTCTCGTATCAAAATTTTATAAAATAGATGTAATATTTATATGATGAATAAAATTCTTA
TAATTTTGAGATGTGATTTTAGAACTCAAAAATATATTAGATTAATATCAAAATGATCAGTAAT
ATGGCGTTGTGAAATTTTAGGATCATAATACCTTGAGTTATGTGTCACATGTCAAAATCCTTGT
GAATTTATGCAATTTGGCCAATTATATATGTGGTTTTGGAAAATTTACTCATTATTAATTAATT
AATTTGTTGCTTAACTACGTAATTTTGCGGCTACAGAGTTACGGTTTGACGGAGTCGACCGGGC
CGGTGGCCACCATGGCTGGGCCGGAGGAGTCGGCGGCGTACGGATCGGTGGGGAGGCTTGCGCC
GCGCGTGCAGGCGAAGATCGTCGACACGGCCACCGGCGAGGTGCTGGGGCCGGGGCGGCGCGGC
GAGCTCTGGATCCGAGGCCCAGTCGTCATGAAAGGCAAGTCACTGGGCTGAATGCACGTTTTGC
TTTACATGTTTTCTTGGTTTATTATGTTTGAAATTGAGAGTTAGTGATTTTTTTAAATGAATCG
ATACTTAGAGAGTTTCAAATTCATTAAATATATAGCAAGAGTAAAATGAGTTGTATAAGTACCA
AGAATTGTACCATAAAGAAAAAAAAACTATAGGATAAGCTGCAAGAATCGTTTTGCTTATACTG
GACCTCAGGTTTTGGTCTCCTTAATTTTTGCCACTAGGATTATCGTTAAAAGTTCTTTGTGTTA
AAACACTTTCCGGTTTCTTTTTTTTCAAGTTTCACATGCCGTTAATAGAATGGGAATACGGCCT
CTTTTTGGTAGCCCTTCATGAACCGTCGTAGCTGTGTTCCACATTGACGATTTGATCTGCTTGA
GTGAGGTCCATCTTGGTAGCATGTCCTATACTTTCTTCTCGTATCCGTATTTCGCTAGAAGAAA
TAGTGAATTACTCGGTATGTTTTTTATTTGGTTAATCTAGGGGCTTTGCTTGACACTGTCATAT
ATGGGGATCTTTTTTTCAGGCTATGTGGGTGATCCTGAAGCAACTGCAGCAACGATCACTCCAG
ACGGCTGGTTGAAAACTGGTGACCTCTGCTACTTCAACGAAGATGGTTATCTCTACGTTGTTGA
TCGATTGAAGGAGCTGATAAAATACAAGGGATATCAGGTACTGACTTCATGGTTGCACGGCTGA
TTCAGAAACTACAGTAACAACACTATCGTTGGAGAATTATCTGAAATAGTTTTTGTTTGCCATT
TTTGCGTGATGCTTCTAATTGCTGATTTTTACACCTGTGATCTTCAGGTACCACCAGCTGAGCT
GGAGCACATTCTACAGTCTCGTCCTGAAATCGCTGATGCTGCTGTTGTCCCGTAAGCATCTTCT
GTTGCTCTCTTCTTTCTTTCGAGAGTATACCTTCAGTTATTCTGTATGAACTGTAGATTAAAAA
ACGGTGTTTCCTTCGTCATGGAACATGTAAGATGTATGCACGATGCAGATATCCTGATGAAGAA
GCTGGGCAACTGCCAATGGCTTTTGTAGTGAGGCAACCGGGTGCATACCTTACCGAGCAACAAG
TCATGAACTGCGTCGCTAAACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.398032003
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2102-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study