Detail information of Os06g0306300_circ_g.1


General Information
CircRNA Name Os06g0306300_circ_g.1
ID in PlantcircBase osa_circ_042314
Alias NA
Organism Oryza sativa
Position chr6: 11559846-11560048  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0306300
Parent gene annotation Haem peroxidase domain containing protein. (Os06t0306300-01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root
Exon boundary   No-No
Splicing signals   GC-AG
Number of exons covered Os06t0306300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTGATCGATCGATCGATGTCGTGTTTTTTTGCAATTTGCAGGGGTGCGACGCGTCCGTGCTG
CTCAGCTCCACCGCGGGGAACGTGGCGGAGCGCGACcctcgccggcccgctcctccgcctccat
ttccacgactgcttcgtccgggtacgtactccggtcgccggcgtcgtgtcgcgtcgcgtgcacg
gcggcgcc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 106
Transcript exons: 11559846-11559894,11559992-11560048
CCTCGCCGGCCCGCTCCTCCGCCTCCATTTCCACGACTGCTTCGTCCGGGGGTGCGACGCGTCC
GTGCTGCTCAGCTCCACCGCGGGGAACGTGGCGGAGCGCGAC

Genomic sequence CCTCGCCGGCCCGCTCCTCCGCCTCCATTTCCACGACTGCTTCGTCCGGGTACGTACTCCGGTC
GCCGGCGTCGTGTCGCGTCGCGTGCACGGCGGCGCCATTGATTGATCGATCGATCGATGTCGTG
TTTTTTTGCAATTTGCAGGGGTGCGACGCGTCCGTGCTGCTCAGCTCCACCGCGGGGAACGTGG
CGGAGCGCGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.242483621
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study