Detail information of orai.004G056100_circ_g.1


General Information
CircRNA Name orai.004G056100_circ_g.1
ID in PlantcircBase gra_circ_000335
Alias Chr04:5358101|5360146
Organism Gossypium raimondii
Position chrChr04: 5358101-5360146  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.004G056100
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.004G056100.2:4
Gorai.004G056100.1:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCACATAATCTTCCTTTTGAGTTTGAATTGTATCATCCACATCATCATTGAGATTCTCAGATAA
ATAGAAACAGCTATAACTGCTAGGTTTTCCTTGAACcaattgccaaataagattgcgcatttct
tcttgtccttcttctgttgtcctcaaccaatgccaccattttgatggacgcaatacgcgaactt
gttttact
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1062
Transcript exons: 5358101-5358595,5358720-5358954,5359647-5359833,5360002-
5360146
CAATTGCCAAATAAGATTGCGCATTTCTTCTTGTCCTTCTTCTGTTGTCCTCAACCAATGCCAC
CATTTTGATGGACGCAATACGCGAACTTGTTTTACTTCTTCATCGCTTTCTTCAGCTGCATTAT
GTACGGCTTCTTCCATGGTATACATAAGCTTTGATAGTGACATGCCCTCATAATGAAATACAAG
CCATATTTCATTAGACCGTGATTCAAATGACTCAACATATCTTGCAATATGGTTCAAACCTTCT
TCAAAAGCAGCCCCGTGAAATCCAGATTTGTTCAGATATATATTTTCAGGACTCAAAGTGATTC
CTAATTCTAAATTTGCATCTAATGTGTCACCATAACCAGATTGTGATTCCTCTAAGAAAGGTTC
CGATACTTCACCCGATGGAAAACTTCCAAGGTTTCTAGAGGCATTTAAGAAAACTTCACCAAAG
TACTTCTCTCTTAGACCACTTAAGTAAACAGAAGCCCCTCTCTCCACCATTATGCGTTTCAGAA
TAAACAGGTTGCCATCAGAAGAACCAACATGACTATCATTCCTAGATGTATTACAACGTGAACT
ACTGCCATATGTATCAAAATGAATATCACCAAAATTGGTAGTCTTGTTTTCTTCACCCCATCTT
GAAGCATCACTGCCATGATGACAATTCCAACTAAACGACAACCATACCTCACCGTAAGAACCAC
GACCAAATCTTTTCTTTAGAATATACCTAGAGTCTGGCATTGGATACTCCTCTGTCCCATAACT
TGAACTAGTATCATGGAAGGGTATGGATTCAAGAAAACCAAGGAAACTAGTGAAGCCCTCAGGA
TTTACGCATTGATCATTAGCTCCATCAACAGTCATCCCAAAGTTTAAGCATAAACTCCGGTCAT
TGTACACATTTAAAGGTCCACCACAGGGTCGTTCAAAGGCATTAGGTAGAGCCTGGGGTAGGTC
ATGCACATAATCTTCCTTTTGAGTTTGAATTGTATCATCCACATCATCATTGAGATTCTCAGAT
AAATAGAAACAGCTATAACTGCTAGGTTTTCCTTGAAC

Genomic sequence CAATTGCCAAATAAGATTGCGCATTTCTTCTTGTCCTTCTTCTGTTGTCCTCAACCAATGCCAC
CATTTTGATGGACGCAATACGCGAACTTGTTTTACTTCTTCATCGCTTTCTTCAGCTGCATTAT
GTACGGCTTCTTCCATGGTATACATAAGCTTTGATAGTGACATGCCCTCATAATGAAATACAAG
CCATATTTCATTAGACCGTGATTCAAATGACTCAACATATCTTGCAATATGGTTCAAACCTTCT
TCAAAAGCAGCCCCGTGAAATCCAGATTTGTTCAGATATATATTTTCAGGACTCAAAGTGATTC
CTAATTCTAAATTTGCATCTAATGTGTCACCATAACCAGATTGTGATTCCTCTAAGAAAGGTTC
CGATACTTCACCCGATGGAAAACTTCCAAGGTTTCTAGAGGCATTTAAGAAAACTTCACCAAAG
TACTTCTCTCTTAGACCACTTAAGTAAACAGAAGCCCCTCTCTCCACCTGTGATCGGGAAGATA
ATGGCATAAGATGATCCAGACAAAACAGTAACAAACAAGATAGAACTAAACACTCATTTAAGGA
AGATGAAAATGAGGTCAACATAAAAAACTTGAGAAAGATTTACCATTATGCGTTTCAGAATAAA
CAGGTTGCCATCAGAAGAACCAACATGACTATCATTCCTAGATGTATTACAACGTGAACTACTG
CCATATGTATCAAAATGAATATCACCAAAATTGGTAGTCTTGTTTTCTTCACCCCATCTTGAAG
CATCACTGCCATGATGACAATTCCAACTAAACGACAACCATACCTCACCGTAAGAACCACGACC
AAATCTTTTCTTTAGAATATACCTGATAAAAGAGAGGTACAAGACTGTCATAATGGTGAAATGA
CGATAAACAACCACCAAATTTCTATTTTTAACCTTTGTTTTCTAATTGGAGAAAACCTAATCAT
CTTAACCATAGAAAATTGCATTTCAGTTCAAAATTTATCTATTGTTTGCATTAAAGAGAACAAA
ATTTTGATCTCTAGGGAAATAAGGTAAAAAGAGATATTCTAATTTCCACCACTTATGTTCTCCT
AAAACTTTTAGCAACATTCGATATCCATTTTCCTTGCAGATGGGGCATCTAGTGCCCATCAATG
TTGATTGTCTATCACCTTGTTAGGATCAAAATTGTAGGATTAGAATATCATCCACAAAAGAAAC
AGTCCACATCTTTTTCAATGACAGAAGTGTCTCTAGTTTAATGTAAACCAAATTATATTTCATA
TTGAGAAAACATAAAATAAAGAAGCAACAATGTATATGTGGATATGTATGAATATAAACATATA
AATATCTATTTATATTACTTCACATACTTTAACATGAATCAGGGTCAATTTTTCCAAAGATCAC
TACTAAGGAGGTGGATAATGAAGTTTTTGGAGGAGATCAATGCATTTAAACTCAGTGATGGAGG
ATCGATGCCATGGAAGATAACCAAGGTTAATGCCAAATGGGGGAGTAAAGCATTAAGCAAAGAA
TAGAATAAACCTAGAGTCTGGCATTGGATACTCCTCTGTCCCATAACTTGAACTAGTATCATGG
AAGGGTATGGATTCAAGAAAACCAAGGAAACTAGTGAAGCCCTCAGGATTTACGCATTGATCAT
TAGCTCCATCAACAGTCATCCCAAAGTTTAAGCATAAACTCCGGTCATTGTACACATTTAAAGG
TCCACCTGACATGGTTTAAAGAAAAATTACTGCAATACTCCAGTCATTGTACACATTAAGGAAG
TCAATGTGCTTCAATTCCTACCAATGAATCAAACAGGAAAACCATAGTGAATCAAAGGACTAAC
AAACCCAGCCGGCCAGATAAAAAGAATAGATAGAACTTTACATACCACAGGGTCGTTCAAAGGC
ATTAGGTAGAGCCTGGGGTAGGTCATGCACATAATCTTCCTTTTGAGTTTGAATTGTATCATCC
ACATCATCATTGAGATTCTCAGATAAATAGAAACAGCTATAACTGCTAGGTTTTCCTTGAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.445705494
Functional Information
Coding potential Y
Potential coding position 5359784-5358103(-)
5358168-5360132(-)
Potential amino acid sequence MTVDGANDQCVNPEGFTSFLGFLESIPFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLS
FSWNCHHGSDASRWGEENKTTNFGDIHFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERG
ASVYLSGLREKYFGEVFLNASRNLGSFPSGEVSEPFLEESQSGYGDTLDANLELGITLSPENIY
LNKSGFHGAAFEEGLNHIARYVESFESRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEE
VKQVRVLRPSKWWHWLRTTEEGQEEMRNLIWQLVQGKPSSYSCFYLSENLNDDVDDTIQTQKED
YVHDLPQALPNAFERPCGGPLNVYNDRSLCLNFGMTVDGANDQCVNPEGFTSFLGFLESIPFHD
TSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLSFSWNCHHGSDASRWGEENKTTNFGDIHFDT
YGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERGASVYLSGLREKYFGEVFLNASRNLGSFPSG
EVSEPFLEESQSGYGDTLDANLELGITLSPENIYLNKSGFHGAAFEEGLNHIARYVESFESRSN
EIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEEVKQVRVLRPSKWWHWLRTTEEGQEEMRNLI
WQLVQGKPSSYSCFYLSENLNDDVDDTIQTQKEDYVHDLPQALPNAFERPCGGPLNVYNDRSLC
LNFGMTVDGANDQCVNPEGFTSFLGFLESIPFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGE
VWLSFSWNCHHGSDASRWGEENKTTNFGDIHFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIM
VERGASVYLSGLREKYFGEVFLNASRNLGSFPSGEVSEPFLEESQSGYGDTLDANLELGITLSP
ENIYLNKSGFHGAAFEEGLNHIARYVESFESRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEE
SDEEVKQVRVLRPSKWWHWLRTTEEGQEEMRNLIWQLVQGKPSSYSCFYLSENLNDDVDDTIQT
QKEDYVHDLPQALPNAFERPCGGPLNVYNDRSLCLNFGMTVDGANDQCVNPEGFTSFLGFLESI
PFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLSFSWNCHHGSDASRWGEENKTTNFGDI
HFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERGASVYLSGLREKYFGEVFLNASRNLGS
FPSGEVSEPFLEESQSGYGDTLDANLELGITLSPENIYLNKSGFHGAAFEEGLNHIARYVESFE
SRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEEVKQVRVLRPSKWWHWLRTTEEGQEEM
RNLIWQL(-)
MVALVEDNRRRTRRNAQSYLAIGSRKT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b