Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.004G056100_circ_g.1 |
| ID in PlantcircBase | gra_circ_000335 |
| Alias | Chr04:5358101|5360146 |
| Organism | Gossypium raimondii |
| Position | chrChr04: 5358101-5360146 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.004G056100 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 2 |
| Tissues | ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Gorai.004G056100.2:4 Gorai.004G056100.1:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.445705494 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
5359784-5358103(-) 5358168-5360132(-) |
| Potential amino acid sequence |
MTVDGANDQCVNPEGFTSFLGFLESIPFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLS FSWNCHHGSDASRWGEENKTTNFGDIHFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERG ASVYLSGLREKYFGEVFLNASRNLGSFPSGEVSEPFLEESQSGYGDTLDANLELGITLSPENIY LNKSGFHGAAFEEGLNHIARYVESFESRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEE VKQVRVLRPSKWWHWLRTTEEGQEEMRNLIWQLVQGKPSSYSCFYLSENLNDDVDDTIQTQKED YVHDLPQALPNAFERPCGGPLNVYNDRSLCLNFGMTVDGANDQCVNPEGFTSFLGFLESIPFHD TSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLSFSWNCHHGSDASRWGEENKTTNFGDIHFDT YGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERGASVYLSGLREKYFGEVFLNASRNLGSFPSG EVSEPFLEESQSGYGDTLDANLELGITLSPENIYLNKSGFHGAAFEEGLNHIARYVESFESRSN EIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEEVKQVRVLRPSKWWHWLRTTEEGQEEMRNLI WQLVQGKPSSYSCFYLSENLNDDVDDTIQTQKEDYVHDLPQALPNAFERPCGGPLNVYNDRSLC LNFGMTVDGANDQCVNPEGFTSFLGFLESIPFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGE VWLSFSWNCHHGSDASRWGEENKTTNFGDIHFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIM VERGASVYLSGLREKYFGEVFLNASRNLGSFPSGEVSEPFLEESQSGYGDTLDANLELGITLSP ENIYLNKSGFHGAAFEEGLNHIARYVESFESRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEE SDEEVKQVRVLRPSKWWHWLRTTEEGQEEMRNLIWQLVQGKPSSYSCFYLSENLNDDVDDTIQT QKEDYVHDLPQALPNAFERPCGGPLNVYNDRSLCLNFGMTVDGANDQCVNPEGFTSFLGFLESI PFHDTSSSYGTEEYPMPDSRYILKKRFGRGSYGEVWLSFSWNCHHGSDASRWGEENKTTNFGDI HFDTYGSSSRCNTSRNDSHVGSSDGNLFILKRIMVERGASVYLSGLREKYFGEVFLNASRNLGS FPSGEVSEPFLEESQSGYGDTLDANLELGITLSPENIYLNKSGFHGAAFEEGLNHIARYVESFE SRSNEIWLVFHYEGMSLSKLMYTMEEAVHNAAEESDEEVKQVRVLRPSKWWHWLRTTEEGQEEM RNLIWQL(-) MVALVEDNRRRTRRNAQSYLAIGSRKT*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |