Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d025449_circ_g.2 |
ID in PlantcircBase | zma_circ_010308 |
Alias | zma_circ_0000044 |
Organism | Zea mays |
Position | chr10: 118892879-118896157 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d025449 |
Parent gene annotation |
Putative MAPKKK family protein kinase |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d025449_T001:8 Zm00001d025449_T003:8 Zm00001d025449_T002:9 Zm00001d025449_T004:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.155111039 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
118896075-118893052(+) 118896155-118896112(-) 118892897-118896112(-) |
Potential amino acid sequence |
MKHLSSFKILSESEGIFLSLAKAAGSMGHCVSAICWRRWCVSQYTGFCSSHCRVILNKRMIHQL DCRSTRCRVTFQAKLQETFPFL*(+) MDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPSTSEANCS RGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPLPLPPASG ACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQSQWKKGKL LGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNIVQYHGSE LSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDIKGANILV GPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTIIEMATAR PPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHPFVQDHPA VRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-) MADTQWPMDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPS TSEANCSRGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPL PLPPASGACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQS QWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNI VQYHGSELSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDI KGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTI IEMATARPPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHP FVQDHPAVRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-) |
Sponge-miRNAs | zma-miR156k-5p |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |