Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d025449_circ_g.2 |
| ID in PlantcircBase | zma_circ_010308 |
| Alias | zma_circ_0000044 |
| Organism | Zea mays |
| Position | chr10: 118892879-118896157 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d025449 |
| Parent gene annotation |
Putative MAPKKK family protein kinase |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d025449_T001:8 Zm00001d025449_T003:8 Zm00001d025449_T002:9 Zm00001d025449_T004:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.155111039 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
118896075-118893052(+) 118896155-118896112(-) 118892897-118896112(-) |
| Potential amino acid sequence |
MKHLSSFKILSESEGIFLSLAKAAGSMGHCVSAICWRRWCVSQYTGFCSSHCRVILNKRMIHQL DCRSTRCRVTFQAKLQETFPFL*(+) MDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPSTSEANCS RGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPLPLPPASG ACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQSQWKKGKL LGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNIVQYHGSE LSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDIKGANILV GPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTIIEMATAR PPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHPFVQDHPA VRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-) MADTQWPMDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPS TSEANCSRGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPL PLPPASGACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQS QWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNI VQYHGSELSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDI KGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTI IEMATARPPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHP FVQDHPAVRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-) |
| Sponge-miRNAs | zma-miR156k-5p |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |