Detail information of Zm00001d025449_circ_g.2


General Information
CircRNA Name Zm00001d025449_circ_g.2
ID in PlantcircBase zma_circ_010308
Alias zma_circ_0000044
Organism Zea mays
Position chr10: 118892879-118896157  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d025449
Parent gene annotation Putative MAPKKK family protein kinase
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d025449_T001:8
Zm00001d025449_T003:8
Zm00001d025449_T002:9
Zm00001d025449_T004:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGCATACTACAAGACATGAAACACTTGTCTTCATTTAAGATCCTATCTGAATCAGAAGGCATA
TTTCTTTCCCTCGCAAAAGCAGCCGGATCCATGGGCcattgtgtgtctgccatctgctggagaa
gatggtgtgtttctcaatacactggattttgcagctctcactgcagggtgatcctgaacaaaag
gatgatcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTGTGTGTCTGCCATCTGCTGGAGAAGATGGTGTGTTTCTCAATACACTGGATTTTGCAGCT
CTCACTGCAGGGTGATCCTGAACAAAAGGATGATCCATCAGCTGGACTGCAGAAGCACGAGATG
CAGGGTTACGTTTCAAGCAAAGCTGCAAGAAACTTTTCCCTTCCTCTGAGAAACTGTCTGGGAT
TTCAGGTATATCTTTACTGTTTGCGATCTTAAATATTGCTGCTACCTGCAAAATAAGATTAGAT
GACACTGACTCAGTGTTATTCATCACGGTTACATGAAAATCATGGAAATTCACAACTTCCAAGT
GAAAGCCTACCCCCTCGTATTGGTGCCAAGGAGGTCTTGCCGTCGCCATTTCAATAATGGTACA
GCCCAGACTCCATATGTCCACTGATAAACTGTAGCCTTTACAGTTCATTATAACCTGAAGGTTT
CCCAATGATGGGAGAACTTCATTCAGAGACGCACAGCAGATTATGACAAATAATCAAGGAAGTT
CGGTATTAAAATAGCTCACCTCAGGAGCCATCCAGTAAGGACTTCCTTTGAAAGAACGTATTTC
AGCAAAAGATGATATCTGCTCAACAAATTTCAAAAAATGAATGGGTTTACAGAGAAAAAAACAA
AAGCAAGCACAATCAGTGTGTATCCTTGTTTTGCTGACCATCCAAGAGCTAAAAACTTGTCCAT
CGTCAAGAGTCTTTTAGCTGGGCAAACACAGAAGAGCACCCTTCCAAAACTTTTCCACATTTAT
TATGTTAGTAGGCACTAGCAGATAACTGGATACTTCATACTTGGGTTCATAAGAAATCAGAGTT
TGCACCTACTTTAATTCCTTTTCTATTAGAACCATGGATACTAATACAATTGAGAAGTATTTAT
TTCAACTGCAATTTTTCGAACTACTTCAACTGAGATTTGAAACTGTATAGTACTCAGATACATA
TAAGTATTCCTCAGCGAATTTCCAGGGTCTACAAGCAAAAATGACTGCCGTGTGTCATACAAAG
TGGAGAGCACTCAGACAAAAACACAGTAGTTGACTTTAAAAGTCCAACAAATATTAAATATTAT
GATAACTGAAAGCGTTAAACACAGGCAGATAGACAGAGAGGGTCAGAAAGTAAACACTGCATAC
ATGCTTAGCCATGCCAAAGTCAGCCAGCTTGACTTCACCATTAGGACCCACGAGTATGTTTGCT
CCTTTGATATCTCTGCCAAAAAAAAGTATGACATGATTATTGCATTCTGTGCTATATGACTATA
CCTATGGAATGAGAAGACAGTTTTAGACAACAAAACAACCTGTGGACAGTGTTCCGCCCATGTA
AGTAGGCAAGGCCAGCAAGAATTTGCCCAGTGTAATTACGAATCACAGGTTCCTTAAAAGAGCC
ATATTCTCTTAATAATTTGTGGATTGAACCCCCCGAAACATACTCAAGACAAATGGAAAGTGAT
TCATCACTCTGCGTACAGAAACATGTACGATTAGAAAGTGTAAGCATGACCAAGTATGTTGTAA
TGCAACACCAATAAAAGCTGATGAGCATTGATTACTATGATACTAGAACCACAAAATAAACCCC
TGAGGTGGACAAATAATAGAATATAGAAGGAAATGCAAATAAGTCAAAACAACAGCAAAAGAAA
ACAATCGAACGATACTTAGTGCATACTACCCCCTGCCATCTATCGCTACCAAAACCATCCATGT
ATGTATGCACAAAAAGTGTGATACTGTAATGGCTCACATAAACAGTAGAAATTTTGCTAATTTC
TGCAACTCCTAATACCTAATACTTCCCAAACCACTGAATGGATTCCATATTCTTTAGGTCACTA
TATACAGTCACATGCATTGGAGCTCAGAATTTGTTGCCATCATATATCTATACAATGCCAGATC
TTTCTTTGACATGTTAAGTTCAAAAAGTGATGAAGCCCTTGTAACTGAGTAATCTTTTTTTGTG
CATGAATGCTCCAACCCCTTTTCCTAGAATAGCCAATCAAGTACACTATATAAGTTACCTATGC
AATCTCACTAAATTGATAACAACTTACCACTAGCTCACAAAAGAAACCATATCACATCAGACAA
TACATGTATGGAATAAAAAACACGATAGGGAAAACAAGTATTGAAACTAAATTGCTGCAGAGGT
AACTGAAATGGTTTATGACATAGAACTTGCCAGCTCACTTCCATGGTACTGCACTATGTTTGGG
TGGGAGAGTTGTCTAAGCATATCTATTTCCTGCCAATGCCAAAATTAATCATGTGGATCAGTCA
ATGAAACAAGAGACAAAAAATACTTAACATTCATGAGATGGCAAACCAAGCCAACTAAGTAAGA
CAACACCAGCAAGTACCTGGTTTAATTGTTTGAGTCGTTCCTTCGAATGTGGATCATCCATAAT
AACTTGAACCTCCTTAATCGCACAAAACTGCCCATTTTCACTGCATTGTTGAACAATCACGAAG
TAAGGATATCTTGTAATGCAATTGAATATGTCAGTTTATTTGCACTGCCATATCTCTATTGTAT
AACTGTAGCATGAGGTGCAATTCTAATGCATCAACTTCCACTAGATGTCGCAAAGTTTCTGTAA
TGTAAAGGGGGAGGGGGGCAAAATGTGATACCTGTTAAATCCAAGGTAAACCTGACCAAATGTA
CCACTCCCTAGCAATTTCCCTTTCTTCCATTGTGACTGGGACTGTGAGCAGTTAGTGGGAGATG
CAGGAAGAGGTGGGCAGGAACTGGGAGACGAAGGAAGAGGCGAGCAAAAACTGTGGGTTGGAAG
AAGAGGTGAGCAAGCACCAGAAGCTGGATGAAGAGGCGAGCATGCACCAGAAGCTGGATGAAGA
GGCGAGCATGCACCAGAAGCTGGAGGAAGAGGCAAGGGATGTGGTGGGCTCCTCAAACCATCCA
TCTTTCTTACTGGTGACCTCGGGCTGAAACCAAATTCTCTAGAATTTCCATTGCTCACAGCGAA
TGCATGGCCTTTTGGGATAGGAGAGAGACTCCTTGTTCTTGGAGCAAAAAGATCTCCAGATATC
ATTCTTCCACGTGAACAATTGGCTTCACTCGTTGAAGGTGCATCACTTTGCAAATGAAGTTCTC
TAACACTAGCCGCAGGAACATCAAAGAACTTCTGATGCTCCCGTGGCATACTACAAGACATGAA
ACACTTGTCTTCATTTAAGATCCTATCTGAATCAGAAGGCATATTTCTTTCCCTCGCAAAAGCA
GCCGGATCCATGGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.155111039
Functional Information
Coding potential Y
Potential coding position 118896075-118893052(+)
118896155-118896112(-)
118892897-118896112(-)
Potential amino acid sequence MKHLSSFKILSESEGIFLSLAKAAGSMGHCVSAICWRRWCVSQYTGFCSSHCRVILNKRMIHQL
DCRSTRCRVTFQAKLQETFPFL*(+)
MDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPSTSEANCS
RGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPLPLPPASG
ACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQSQWKKGKL
LGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNIVQYHGSE
LSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDIKGANILV
GPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTIIEMATAR
PPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHPFVQDHPA
VRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-)
MADTQWPMDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPAASVRELHLQSDAPS
TSEANCSRGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFSPRSPVRKMDGLRSPPHPL
PLPPASGACSPLHPASGACSPLHPASGACSPLLPTHSFCSPLPSSPSSCPPLPASPTNCSQSQS
QWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVIMDDPHSKERLKQLNQEIDMLRQLSHPNI
VQYHGSELSDESLSICLEYVSGGSIHKLLREYGSFKEPVIRNYTGQILAGLAYLHGRNTVHRDI
KGANILVGPNGEVKLADFGMAKHISSFAEIRSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTI
IEMATARPPWHQYEGVAAIFKIANSKDIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHP
FVQDHPAVRAAKSSVLRNTPSSPADGRHTMAHGSGCFCEGKKYAF*(-)
Sponge-miRNAs zma-miR156k-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b