Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA032914_circ_g.3 |
ID in PlantcircBase | osi_circ_002812 |
Alias | 10:12822665|12825892 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 12822665-12825892 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA032914 |
Parent gene annotation | NA |
Parent gene strand | + |
Alternative splicing | BGIOSGA032914_circ_g.1 BGIOSGA032914_circ_g.2 BGIOSGA032914_circ_g.4 BGIOSGA032914_circ_g.5 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | BGIOSGA032914-TA:9 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
12823166-12825889(+) |
Potential amino acid sequence |
MEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKI DWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVN VVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATP FPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHT VYPSSYSKSLAFLYSQGYNLLVVNYRFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSS EKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSL VFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELS SAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKIDWPADGKLEGLSVADVVPIVMCPQDGC FPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDN ILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATPFPSPSDKISAILADHKFSILKIPISNS SNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRF EGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIP ALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRP CALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGT HNATNSMHKIDWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIW GSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPN QWEWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPT IVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRFEGISWNQEETLVAYVAEEPPQPKPEFN DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQV IWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETA PTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKIDWPADGKLEGLSVADVV PIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVNVVSREVSRVSPQDSDYS WNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATPFPSPSDKISAILADHKF SILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQG YNLLVVNY(+) |
Sponge-miRNAs | osa-miR815c |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | leaf senescence |
Other Information | |
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References | Huang et al., 2021 |