Detail information of BGIOSGA032914_circ_g.3


General Information
CircRNA Name BGIOSGA032914_circ_g.3
ID in PlantcircBase osi_circ_002812
Alias 10:12822665|12825892
Organism Oryza sativa ssp. indica
Position chr10: 12822665-12825892  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA032914
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA032914_circ_g.1 BGIOSGA032914_circ_g.2 BGIOSGA032914_circ_g.4 BGIOSGA032914_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA032914-TA:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTTCATGGTGGACCACACACTGTTTACCCATCAAGCTATTCAAAATCGTTAGCATTTCTTTA
TTCACAGGGATATAACCTTCTTGTTGTGAACTATAGgtttgaagggatatcgtggaatcaagaa
gagactttagtagcttacgttgctgaggagcctcctcaaccgaagccagaattcaatgattcag
gatacaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTGAAGGGATATCGTGGAATCAAGAAGAGACTTTAGTAGCTTACGTTGCTGAGGAGCCTCCT
CAACCGAAGCCAGAATTCAATGATTCAGGATACAAGAAGGCTGGCTCGTCTGAAAAAGACTGCA
AGAGCTGGAAGGGAAAAGGGGATTGGGAAGAAACTTGGGGAGAAACGTATTCCAAGAAAAGGAT
ACCTGCATTGTTCGTGGTCAACATTTCAAGGTGTGTTTCTGGTTGTTCTGAAGGTTGAATCCAA
AATAGCTTTAAAAGTACTGCAATTTTGTGAGGAATAGTTTCATTGCAGCGGTGAAGTGCGAGCT
GTGAAGGGCATACCGAGAACATTAAGTGTTGGCCAAGTGATTTGGGCTCCATCATCATCACATA
GCCTGGTTTTTGTGGCGTGGTCATCTGATAATGGTTACCAAAAGACACCAAGGAAACTTGGAAT
TAAATACTGCTTTAACAGACCTTGTGCTCTGTATGCTGTTCCTGATCCTTTCATGGAAGAAGCT
GATAAGCCATCACTTAAGTGAGAACACCTGTCCTTGATGACAATATTTATTCAGTTCTATTTCA
ACTATGCACCATTGTAGGCTTCCTGTTCTAACATATTAAGTTATTAATTGTCACATTTTAGTTA
TTTTCTAGTGATCGTGTGACACTGTAAATTCTTCTCTCAGAATAATTGTAGCAGCATATTTTTT
TCAAGGAAAAAAAATCTTCCATATATATTTTCACTCTTTTTTCCTCATTAATCCTAGTCCTGAG
CAGACAAATGCTAAATGGATTGTATGCATCATGTCTCAAAAAATAGAAAGTTTATTTCTGATGT
CATTTCTGTTTATTGTACAGTGTCAGTAAGGGTGAAACTGCACCTACAACCAAGTTAACATCAG
AGTTGAGCAGTGCTTTTTTCCCACGATTCAGGTAGGACTGCATTCAGTTTTCTTTGCTCAGTAC
TTTTATTCAGTTTAGGCCATATGTCTCAACTATTATATTGGAAGAAGTACAAGCTACACATCCT
AGCCGTATTTCTTTAATTATGCATTATAATTGTTAGGCGTAATTTTTCTTCTATGGTTTAAAAT
ATTTTAATCAAATTCCCTTAAAGCATGTCAATTGATTGTTCATGCTTGTTATCATGTATTTTAA
CCTAAATATTTGAACAATCATAATTCAAATGGGAGTGAATTTGGAAAGTGGAGCATTTTGGGCT
GATGAGTAGGTGTCTTTATTATTTCCTTGTTCCTGTAATCCTGTGGATTGACTCAGTAGATATT
AATTTACTGCAACACCAATACATTTTATTTGCACATCTACAATTGAAGTTTTCATGTCTAGATT
ATAACTTAGTACTGGTAGCTGATGCATGTAGATGAATGTTAACAATGCGTCGCAAAAATGATAT
GGAATCTTTATTGTACAGTCCAGATGGAAAGTATCTTGTGTTTATCTCAGCAAAGAGTGCTATA
GATAGTGGAACACACAATGCGACAAATTCAATGCATAAGATTGACTGGCCTGCAGATGGGAAAT
TGGAGGGCCTCAGTGTTGCTGATGTGGTACAACAATGCCTTTCCTTTACTTGTTAATTTTTTAA
TCGATCATTTTGTTTAGATGGCTTCCTTTTATATATAGCTTCAAAGTCATGGCTTGGAAAAATA
CATAAATCTAACCAGTGTTTATTTGAGCACATTGTTTGCCAGTTGGCTATACTTGATTAAAGAT
ATGTATTTCTGGACTTTGTGAAGTGGAACTTCAATTTTTTTTTAATTATTGAAGTATCTAAATT
CAATTTCAGTTAAAAGAACGAAGTTCAGAGGGTAAAATTTATAATGGTGTGTTTCTTTTTATAG
GTGCTCTGCATATCCGATATCAAGTTCTTAATGTCTTAGCTGTTATGTAGGTACCTATTGTGAT
GTGCCCTCAGGATGGTTGTTTTCCTGGTCTGTACTGCTCTGGCATACTTAGGAATCCATGGCTT
ACTGATGGACAAACTATGATTTTATCTTCTATTTGGGGAAGTAAGGAAGTAATACTTTCTGTAA
ATGTTGTGAGGTGATTACAAGCATTTTTATCCATCAGTTAGAATGATATGGCTATAAAGTTTAT
TTATTTATGAAATTACCTATTTTCTTCACAGCCGTGAAGTTTCAAGAGTTAGTCCTCAGGATTC
GGATTATTCATGGAATGTTCTTGCACTAGACAAGGATAATATTCTTGCAGGTAATTCCGTACCG
AAGTTACAGTTGTATCCCATAGTTCCTTTGGATAAGATTTCATATTCATGTGCCTTTCCCACCT
TTTCCAGTTTCAAGCAGCCTTATTACAGTTCCTCAAATATACTATGGGTCTGAGGTTTGTCAGA
CTGGAAAACCAAACCAATGGGAGTGGCAAGAAATTGCAACTCCTTTTCCGAGTCCTTCTGATAA
GGTATAACTGAAAAAATGCGTTGCTTGTTCAACTTTTCCCCAAAAACACTGACAAAAATTTTGG
CAGTGTAAAGTACTAACAGTTTCTGTGATGTATGTTTGGCAGATCAGTGCAATATTAGCAGACC
ATAAGTTCAGTATACTCAAAATCCCGATTAGCAACTCTTCTAACAAACTCGCTGATGGTATGTG
TACAACCCAAAGCTCCTTTCTTTAATGAAATGACAGACAGCTCTCCTGCATTCGAGGAAAAAAA
AAAGCCTCTGACTGTTTTTTTTTCCTGGAATTGGTACTCTTTGGTGCCTTGTGTTTTGAATACT
TCTGTTACTGCATTCTTCAGTTGACGCTATGTTTTTCTTGAGATCAGCTGTACTGTCTAGTACT
TGTAGGCTGATATATTCTGAACTGTGACAAAATCTAACCATGTTGCATTTACTCAAGGCAACAC
TAAAATGCATTTGTAAGAAAGTTCTCAAAGCTCATGGTAGAATACTCTTCTTGGTTGTTTGCAT
CCTTAAGGATGCATGCTAAGCTTCATTTGCATTTTAATGTTTGAAAATGTACTTTAGTAGAATA
CTCACATCCTCTCCCCTTCCTAAATTTTTATATTTTATAAAATTGATTCAGGTGCTAAGCTGCC
CTTTGAGGCTATTTTTGTGTCCTGGAAGGATTCTGCAACAAGACCAACAATTGTTGTTCTTCAT
GGTGGACCACACACTGTTTACCCATCAAGCTATTCAAAATCGTTAGCATTTCTTTATTCACAGG
GATATAACCTTCTTGTTGTGAACTATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 12823166-12825889(+)
Potential amino acid sequence MEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKI
DWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVN
VVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATP
FPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHT
VYPSSYSKSLAFLYSQGYNLLVVNYRFEGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSS
EKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSL
VFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELS
SAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKIDWPADGKLEGLSVADVVPIVMCPQDGC
FPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDN
ILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATPFPSPSDKISAILADHKFSILKIPISNS
SNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRF
EGISWNQEETLVAYVAEEPPQPKPEFNDSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIP
ALFVVNISSGEVRAVKGIPRTLSVGQVIWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRP
CALYAVPDPFMEEADKPSLNVSKGETAPTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGT
HNATNSMHKIDWPADGKLEGLSVADVVPIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIW
GSKEVILSVNVVSREVSRVSPQDSDYSWNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPN
QWEWQEIATPFPSPSDKISAILADHKFSILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPT
IVVLHGGPHTVYPSSYSKSLAFLYSQGYNLLVVNYRFEGISWNQEETLVAYVAEEPPQPKPEFN
DSGYKKAGSSEKDCKSWKGKGDWEETWGETYSKKRIPALFVVNISSGEVRAVKGIPRTLSVGQV
IWAPSSSHSLVFVAWSSDNGYQKTPRKLGIKYCFNRPCALYAVPDPFMEEADKPSLNVSKGETA
PTTKLTSELSSAFFPRFSPDGKYLVFISAKSAIDSGTHNATNSMHKIDWPADGKLEGLSVADVV
PIVMCPQDGCFPGLYCSGILRNPWLTDGQTMILSSIWGSKEVILSVNVVSREVSRVSPQDSDYS
WNVLALDKDNILAVSSSLITVPQIYYGSEVCQTGKPNQWEWQEIATPFPSPSDKISAILADHKF
SILKIPISNSSNKLADGAKLPFEAIFVSWKDSATRPTIVVLHGGPHTVYPSSYSKSLAFLYSQG
YNLLVVNY(+)
Sponge-miRNAs osa-miR815c
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description leaf senescence
Other Information
References Huang et al., 2021