Detail information of Os04g0402100_circ_g.7


General Information
CircRNA Name Os04g0402100_circ_g.7
ID in PlantcircBase osa_circ_023709
Alias Os_ciR1050
Organism Oryza sativa
Position chr4: 19915018-19915265  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os04g0402100
Parent gene annotation Similar to Calnexin (Fragment). (Os04t0402100-01);Similar to cal
nexin. (Os04t0402100-02)
Parent gene strand -
Alternative splicing Os04g0402100_circ_g.8 Os04g0402100_circ_g.9 Os04g0402100_circ_g.10 Os04g0402100_circ_g.11 Os04g0402100_circ_g.12
Support reads 14
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os04t0402100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATTTGTCAGGACCAAACATAATAGTGTAAGGAGTCTCATTATCAAACTCCTTGGCATCCCATG
CAGCATCCTGAGGACGAATGTACTTAAGATATGCACctcattatcaggcttcaagatagccgtg
tagacatgagagagcttatcatatgggacagaaggtgggaacttgaggtggtgttcaacatact
tgccagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTATCAGGCTTCAAGATAGCCGTGTAGACATGAGAGAGCTTATCATATGGGACAGAAGGT
GGGAACTTGAGGTGGTGTTCAACATACTTGCCAGTCTTGGGGTTCTTGTGCTTAAGGATGAAAT
GCACCTTGTTAGTTGATCCACATTTGTCAGGACCAAACATAATAGTGTAAGGAGTCTCATTATC
AAACTCCTTGGCATCCCATGCAGCATCCTGAGGACGAATGTACTTAAGATATGCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.369349429
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015