Detail information of Zm00001d049083_circ_g.1


General Information
CircRNA Name Zm00001d049083_circ_g.1
ID in PlantcircBase zma_circ_007974
Alias zma_circ_0001565
Organism Zea mays
Position chr4: 15486613-15486864  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method find_circ
Parent gene Zm00001d049083
Parent gene annotation F-box protein SKIP16
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d049083_T005:1
Zm00001d049083_T004:1
Zm00001d049083_T003:1
Zm00001d049083_T006:1
Zm00001d049083_T002:1
Zm00001d049083_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCAGACCCGCCTCGGCCGGTGCGGGCTCTGGCGGCGGCTGGGACGCCATCGGCGTGGCGGAGG
CGCGGAGCCCTCCGATGCGGTGGGAGGTTCTGGGGCcgtcgagccccaggtcctcaccgcagaa
tctgcgccagagggagtcgtcggcaacggcggtgcggaggcgcgtgctggcgcaggcgagcgcc
gctgcggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTCGAGCCCCAGGTCCTCACCGCAGAATCTGCGCCAGAGGGAGTCGTCGGCAACGGCGGTGCG
GAGGCGCGTGCTGGCGCAGGCGAGCGCCGCTGCGGGGCGCGCGCCGGCTCTTGAGATGACCGTG
TCGAGGACGAGGCCCTCCATGCTTTCCAGACCCGCCTCGGCCGGTGCGGGCTCTGGCGGCGGCT
GGGACGCCATCGGCGTGGCGGAGGCGCGGAGCCCTCCGATGCGGTGGGAGGTTCTGGGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.224911442
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b