Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os05g0145600_circ_g.1 |
| ID in PlantcircBase | osa_circ_026556 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr5: 2619002-2622318 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | PcircRNA_finder |
| Parent gene | Os05g0145600 |
| Parent gene annotation |
Pentatricopeptide repeat containing protein. (Os05t0145600-01) |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 73 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Os05t0145600-01:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.113069433 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
2622308-2619004(-) |
| Potential amino acid sequence |
MKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEE TMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQMTIYHVAI HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSPPAEL YVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTIANYVWDLM QNRRITPSLPAVEAYYKGLKLLEEMKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAG LGLNKFCYAGLITAFKNKAPTTEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYN LPTAEYVHRQAFVYKQMTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQ CGDIDSAVKIFEEYTSSKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGT DLLLAASGEKTGGYTIANYVWDLMQNRRITPSLPAVEAYYKGLKLLEEMKAHGVKLKGETYTCL LNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKIVEFVQQSKGWK NVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQMTIYHVAIHACADLKSKETLEVLL DMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSPPAELYVTLAEGAMIGHTPRG MQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTIANYVWDLMQNRRITPSLPAVEAYY KGLKLLEEMKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFK NKAPTTEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQ MTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTS SKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI ANYVWDLMQNRRITPSLPAVEAYYKGLK(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |