Detail information of Os05g0145600_circ_g.1


General Information
CircRNA Name Os05g0145600_circ_g.1
ID in PlantcircBase osa_circ_026556
Alias NA
Organism Oryza sativa
Position chr5: 2619002-2622318  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene Os05g0145600
Parent gene annotation Pentatricopeptide repeat containing protein. (Os05t0145600-01)
Parent gene strand -
Alternative splicing NA
Support reads 73
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0145600-01:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACTTGATCTGTACGCCCTGTTGCTGCAAGTGCATTCAAAAGACAAGTGTATGTTTCACCTTT
CAACTTAACGCCATGTGCCTTCATTTCTTCTAAAAGcttcaaacccttgtagtatgcttcaaca
gcaggaagtgatggagtgattctgcggttttgcatgagatcccagacataatttgctattgtat
atccacca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCAAACCCTTGTAGTATGCTTCAACAGCAGGAAGTGATGGAGTGATTCTGCGGTTTTGCATG
AGATCCCAGACATAATTTGCTATTGTATATCCACCAGTCTGAAAGAATCCACAGAGTTTCAACC
GTAAGTGATTTGGGAAGCTATTTGGATTCATTTCAAGAATATGACATAAGTAAAATAATTGTGT
TTTCTTCAAATAGATGCATTAGCATTTGTAGGACTTGCAAGTACAGGAGGGTGGTAGCTGTGAT
ACTTACCTTTTCACCTGAAGCTGCAAGTAGAAGATCAGTTCCCATCCTTGCGTTTAAGAAGAAA
TTTCTCGAAGTCATCTTCTCCTGAAAAATATTCTGAGATGTAAAAAATTGAATTTCTAAGTTGG
AGAAACTAGAAAACCAAAACAGAAGGAAAAATTACTATGGTTTCTTGAGCAAGTTGCATTCCTC
TTGGTGTATGCCCAATCATAGCTCCCTCAGCAAGTGTCTGCATGCCAATTATGCATAGAATACA
CACAAATATATATGAGAGCACAAAGTTCGAAACAAGAGATAGAGTGTCAACTGAAATGGACTAC
TTTTTTATGATTTCCATGTAGATCCTCAATGAGCTCCACCATGGTAAAAGTTATTTATTTATTT
AGCAGTGCTGTAAAAGACAATGCTACTGTGACTAATAAGCAAGAAAGCAGATAGTATAAATCCT
ATATAGTAACTAAAATGTAAGAAATGGTATAGTGCCTTAATTTGTGTTTCAGTTCAAAAGCTTA
GAAACGGCACAAAACCAGAGTAGGTTCAGCAGTGTATACTGTATAGTAAACCTGTTATTCACTA
GAATTGTAAATTATGTAGAGGAATCCAAAGTTCCAAACCTATGTTGCTTGTCAACCAAAAAAGT
AACAGTATCACTTTTGACAAGACAATGATCAAACTGATTTTTAAATTTCATGAAACCACTAGGA
ACTGATGTAGTGAACACAAGAGGTAAGCTAATCGTGTGAACTTAACAGTGATTGATCTCAAACT
TGTTTTTTTTTTATGACATAAGAATAGTAGAATCGTGCAAACTACACTATCTTATCGACTCGGT
CTTTTTTTTACTCTGTAGAGGGATTAGGTACTAAACATAATTTTTGTACTTTCAGAATACAGTT
AGCACTTATGGTTAATGATTAATGATCTCAAACTTGTTTCATTTTTTTTGTACTTAACTTTTTT
CCCTGCCAAAAAAAAAATCACTTCCTCAACAAAAGTTTCCCTTCTTACTAAGGGTTTTACTCAC
CACATACAACTCTGCAGGCGGGGATTTTGAGCTTGTGTACTCTTCAAAAATCTTAACGGCGGAA
TCAATATCTCCACATTGAAGATAACACCTTTTTCAGTTAAAAGAATAACAAAATAGCAGCTAGA
ATCAGAAACTAGTTGGTAGTACAATAAAACAGGACACATGAAGGGGTAGCAAAACAAGGACAGA
CATGCCCAAAAAATAGAAAATATACCATTCCCAAAAGGAATCCATTAAAAAAAGCAATGATCCT
TTGATATGAACAGTTATAATATATGTGTACTCAAGAAGGTTTTCAGCAAATATAATACTCAAGA
CTGAAAATTTAGAGAGCAGAGAAACACCAGATATTTTTTAAAGATGAATGTTCTTTCATACTTT
AACAATAATAATGAGGGCATAGTGGGACATACTTCTATACTGTACACCTCTGGAACAACTAACA
ATGCAATTAGATCACTACATCATATTGTTCAGGCACTAAAACTTATATCAGGAAATGGTAAACA
TCCATAGAATAGATTACCTCATAGCTTGCATCGCAATGAAGGCATCATAAGTAAATCCATCTTT
AATAAGCATGTCAAGAAGTACTTCAAGTGTCTGCAGAATAGCAAAGTAAATTGAACTTCTTCAT
GGAACTAGGACATATAACTCAATGTTGAAGATTTTGGGCAACAGTAGGGTACGCGAAAGCATAC
ATTTATGTCAACTGTCGAGGCTGCTGAACAGCAACCACGAACTCACTCCGTCCAACAATATAAG
CATTTCTAGGTTGTTTAGCAAATAAGGTTGAGGAGAAAAGATTTTAGTGCCCCTCATTTGATGG
GAGATGGTTGGGGGGGGGTGTAATATAGGAAGAAATTTGTATTAGAGATTGAGAACTGAGAGGT
GATTCATGTGACAAGTAGTGTAGGAATGCTTATATTCTAGGACAAAATTCAAATGCTTGTATTG
TTGGATGGAGGGAGTATTAGTTAATGCAAAAAAGGTAACACAAAGGCAAAATAAGCACACCTCT
TTGCTCTTCAGGTCTGCACAAGCATGGATAGCAACATGATAAATTGTCATCTGTTTATAGACAA
ATGCTTGTCTATGTACATATTCAGCTGTTGGCAGGTTATAAAGCTCTTCCTCTGACACATTCAT
CATTATATTTTCGGAGCTATCTTTTGATACTCTTTCAACATTTTTCCAACCTTTTGACTGCTGA
ACAAACTCGACAATCTGATAGAAAAAAATTGTAGTTCAAATTAACTGTTTGAACATGTTAAATA
CATCCATCTAATAACTGCCCATGTATGCAAAACATACTTTTGTCATAGTCTCCTCAGTGGTTGG
TGCCTTGTTCTTGAATGCGGTTATTAGTCCAGCATAACAAAACTTGTTTAATCCAAGCCCAGCA
GCGGTCATATCACGAACTATAGCATACCTGTCAAAACAAAATATTTATGAGAAGTTTCTCACAA
AAGGGTAAATGGTTAAAGTAGAAACTGCAGTACGTTAAGTAACATTTCTATTAATATGGATGTA
TTGGCATGGAAGTAACAGCAAGTTAATTGTACTGCAACCTCCAGATCGGTTACATTGGTACTAA
CAATTCCAATATTCTTAAATTCAAAACATAAGTTATATATGATTTTACATTTTGTAATATCTTT
CTACATTTTTTCCTCACATGCTCAATCAGGCAGATCCATGCAGATTCAATAGAGTGATTAGCAG
TTCGGATGAAGTGAACAGAAATAACAAAGGTAATGAGTTATTAATGTCAATTAGGCCTTGGCTT
ATTCATTGCTAGATGGTATTCAGTACTTCATGAAATCATGCTATGCATAGTGAACCACAATGTG
TATAGACCAAACGATTTTATATTTCAGCCTCAGTTGTTGCCGTGATCTACTGTTTGAGCAAAAG
AATGTTGAGGAACCCTTACACTTGATCTGTACGCCCTGTTGCTGCAAGTGCATTCAAAAGACAA
GTGTATGTTTCACCTTTCAACTTAACGCCATGTGCCTTCATTTCTTCTAAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.113069433
Functional Information
Coding potential Y
Potential coding position 2622308-2619004(-)
Potential amino acid sequence MKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEE
TMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQMTIYHVAI
HACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSPPAEL
YVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTIANYVWDLM
QNRRITPSLPAVEAYYKGLKLLEEMKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAG
LGLNKFCYAGLITAFKNKAPTTEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYN
LPTAEYVHRQAFVYKQMTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQ
CGDIDSAVKIFEEYTSSKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGT
DLLLAASGEKTGGYTIANYVWDLMQNRRITPSLPAVEAYYKGLKLLEEMKAHGVKLKGETYTCL
LNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFKNKAPTTEETMTKIVEFVQQSKGWK
NVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQMTIYHVAIHACADLKSKETLEVLL
DMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTSSKSPPAELYVTLAEGAMIGHTPRG
MQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTIANYVWDLMQNRRITPSLPAVEAYY
KGLKLLEEMKAHGVKLKGETYTCLLNALAATGRTDQVYAIVRDMTAAGLGLNKFCYAGLITAFK
NKAPTTEETMTKIVEFVQQSKGWKNVERVSKDSSENIMMNVSEEELYNLPTAEYVHRQAFVYKQ
MTIYHVAIHACADLKSKETLEVLLDMLIKDGFTYDAFIAMQAMRCYLQCGDIDSAVKIFEEYTS
SKSPPAELYVTLAEGAMIGHTPRGMQLAQETIEKMTSRNFFLNARMGTDLLLAASGEKTGGYTI
ANYVWDLMQNRRITPSLPAVEAYYKGLK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017