Plant Circular RNA Database

Detail information of Os06g0680900_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os06g0680900_circ_g.1
					
						ID in PlantcircBase
						osa_circ_032020
					
						Alias
						Os06circ16741/Os_ciR585, 
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr6: 28367152-28368274  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl, circRNA_finder, find_circ, CIRI-long
					
						Parent gene
						
							Os06g0680900						
					
						Parent gene annotation
						
							Similar to predicted protein. (Os06t0680900-01);Exostosin-like f
amily protein. (Os06t0680900-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						7/50/2
					
						Tissues
						leaf and panicle/root/seed, leaf
					
						Exon boundary  
						
							Yes-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os06t0680900-02:3

General Information
CircRNA Name	Os06g0680900_circ_g.1
ID in PlantcircBase	osa_circ_032020
Alias	Os06circ16741/Os_ciR585,
Organism	Oryza sativa
Position	chr6: 28367152-28368274 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl, circRNA_finder, find_circ, CIRI-long
Parent gene	Os06g0680900
Parent gene annotation	Similar to predicted protein. (Os06t0680900-01);Exostosin-like f amily protein. (Os06t0680900-02)
Parent gene strand	-
Alternative splicing	NA
Support reads	7/50/2
Tissues	leaf and panicle/root/seed, leaf
Exon boundary	Yes-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os06t0680900-02:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATAT
CTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATATtggtggaaggcgtaggcgtcgcggtaca
cggcgcccctggggatgaacccgccgccgtcgtccggcgtgcagctgcgcgtgcggctggctcg
ccggatgg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 163
Transcript exons: 28367152-28367206,28368167-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCACGGTCTCT
AGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATC
TGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Transcript length: 164
Transcript exons: 28367152-28367217,28368177-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATAT
CTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Transcript length: 169
Transcript exons: 28367152-28367206,28368161-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCGACGGCACG
GTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAAC
AATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Transcript length: 180
Transcript exons: 28367152-28367276,28368220-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCGCA
GTAGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Transcript length: 189
Transcript exons: 28367152-28367228,28368163-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGGCACGGTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCA
GTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Transcript length: 211
Transcript exons: 28367152-28367276,28368189-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCCC
TGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAACCAAGT
GCTGGCTCTTGAAGAATAT
Transcript length: 217
Transcript exons: 28367152-28367290,28368197-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC
CATCCTCCCGACATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAA
CCAAGTGCTGGCTCTTGAAGAATAT

Transcript length: 690
Transcript exons: 28367152-28367297,28367525-28367950,28368157-28368274
TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC
CATCCTCCCGACCTGAACTCGGCGGTTCACGAGTTCCCTGGCATGATGAGCATGGCGTGATGAC
GGTGATGGCACCCAAGCCGGTGAGAGTGAATGGTGATGGCCGGCGGCGGCGGCGGCGCCGGCAG
GAGACCAGACGCGGCCGACGGCGACGTGCGCGGCGAGGACAGAGACGGAGACGGCGGCGGCGAC
GAGGAGGAGGCACGAGGCCAGGGTGACGACGACGCCGTGGCAGGCGCAGCTGTTCTTGGACGCC
ATTGATGGTCAGGTGATCAGGTCAGTTCAGTTTCAGGCTTTCAGGTGAGCTGATCCACTCATGC
ATTGGTGCATTCCGGGCTATATGTAGCAGAAGATGGTGTAGTCTCTACGTTACAAGAATCAAGA
TCACCATGGTAAGCTTAGCTCAGTAGCTCAGTCCCAGGTCGATCGATGCGTGATTGGGATCGTG
GACGGCACGGTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGT
AGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
						
					

						Genomic sequence
						
							TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG
GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC
CATCCTCCCGACCTGAACCTGACACACACGCATGCACAAACAAAAATATTTGTCAAATATACAT
GTCAAAAATATTTATCAAAAACATGTCACAGCAACATCGCTGACTTTTTTTTTTTTGCATTGAC
ACTTCCTGCATCTGAAACTGCACTGCTGCAATTCTGCATCCATTGCCCATTACGGATCACATCA
TCACTGCACAAACACCGTTGAGTCTGAGTGTGGCATGAGCATGGCGTACGTACTCGGCGGTTCA
CGAGTTCCCTGGCATGATGAGCATGGCGTGATGACGGTGATGGCACCCAAGCCGGTGAGAGTGA
ATGGTGATGGCCGGCGGCGGCGGCGGCGCCGGCAGGAGACCAGACGCGGCCGACGGCGACGTGC
GCGGCGAGGACAGAGACGGAGACGGCGGCGGCGACGAGGAGGAGGCACGAGGCCAGGGTGACGA
CGACGCCGTGGCAGGCGCAGCTGTTCTTGGACGCCATTGATGGTCAGGTGATCAGGTCAGTTCA
GTTTCAGGCTTTCAGGTGAGCTGATCCACTCATGCATTGGTGCATTCCGGGCTATATGTAGCAG
AAGATGGTGTAGTCTCTACGTTACAAGAATCAAGATCACCATGGTAAGCTTAGCTCAGTAGCTC
AGTCCCAGGTCGATCGATGCGTGATTGGGATCTGCAACACAAACGGTTTTCGAGTTCAGGATCA
TATCTGCATCCGTGTCAGATAATTGCAGCTTTGGATCTGCAACCAACCTAGGAGTTGGATCAGT
CACTTGCAACAGTTGCAAAATTTTGCAATGCAGAGGTTGGGTGCATATGAAGGCACTGGTGTTA
TTGTGCATTGAGGCGATAGAATAATAACAGAGAAGACTGACTCACCGTGGACGGCACGGTCTCT
AGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATC
TGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
						
					

			
		

Sequences
Splice junction sequence	TAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATAT CTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATATtggtggaaggcgtaggcgtcgcggtaca cggcgcccctggggatgaacccgccgccgtcgtccggcgtgcagctgcgcgtgcggctggctcg ccggatgg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 163 Transcript exons: 28367152-28367206,28368167-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCACGGTCTCT AGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATC TGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 164 Transcript exons: 28367152-28367217,28368177-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATAT CTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 169 Transcript exons: 28367152-28367206,28368161-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCGACGGCACG GTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAAC AATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 180 Transcript exons: 28367152-28367276,28368220-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCGCA GTAGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 189 Transcript exons: 28367152-28367228,28368163-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGGCACGGTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCA GTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 211 Transcript exons: 28367152-28367276,28368189-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCCC TGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAACCAAGT GCTGGCTCTTGAAGAATAT Transcript length: 217 Transcript exons: 28367152-28367290,28368197-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC CATCCTCCCGACATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATCTGTAGATCAA CCAAGTGCTGGCTCTTGAAGAATAT Transcript length: 690 Transcript exons: 28367152-28367297,28367525-28367950,28368157-28368274 TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC CATCCTCCCGACCTGAACTCGGCGGTTCACGAGTTCCCTGGCATGATGAGCATGGCGTGATGAC GGTGATGGCACCCAAGCCGGTGAGAGTGAATGGTGATGGCCGGCGGCGGCGGCGGCGCCGGCAG GAGACCAGACGCGGCCGACGGCGACGTGCGCGGCGAGGACAGAGACGGAGACGGCGGCGGCGAC GAGGAGGAGGCACGAGGCCAGGGTGACGACGACGCCGTGGCAGGCGCAGCTGTTCTTGGACGCC ATTGATGGTCAGGTGATCAGGTCAGTTCAGTTTCAGGCTTTCAGGTGAGCTGATCCACTCATGC ATTGGTGCATTCCGGGCTATATGTAGCAGAAGATGGTGTAGTCTCTACGTTACAAGAATCAAGA TCACCATGGTAAGCTTAGCTCAGTAGCTCAGTCCCAGGTCGATCGATGCGTGATTGGGATCGTG GACGGCACGGTCTCTAGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGT AGCAGTAACAATATCTGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT
Genomic sequence	TGGTGGAAGGCGTAGGCGTCGCGGTACACGGCGCCCCTGGGGATGAACCCGCCGCCGTCGTCCG GCGTGCAGCTGCGCGTGCGGCTGGCTCGCCGGATGGACACCCGCGCCTGGACCAGCCCGGCCTC CATCCTCCCGACCTGAACCTGACACACACGCATGCACAAACAAAAATATTTGTCAAATATACAT GTCAAAAATATTTATCAAAAACATGTCACAGCAACATCGCTGACTTTTTTTTTTTTGCATTGAC ACTTCCTGCATCTGAAACTGCACTGCTGCAATTCTGCATCCATTGCCCATTACGGATCACATCA TCACTGCACAAACACCGTTGAGTCTGAGTGTGGCATGAGCATGGCGTACGTACTCGGCGGTTCA CGAGTTCCCTGGCATGATGAGCATGGCGTGATGACGGTGATGGCACCCAAGCCGGTGAGAGTGA ATGGTGATGGCCGGCGGCGGCGGCGGCGCCGGCAGGAGACCAGACGCGGCCGACGGCGACGTGC GCGGCGAGGACAGAGACGGAGACGGCGGCGGCGACGAGGAGGAGGCACGAGGCCAGGGTGACGA CGACGCCGTGGCAGGCGCAGCTGTTCTTGGACGCCATTGATGGTCAGGTGATCAGGTCAGTTCA GTTTCAGGCTTTCAGGTGAGCTGATCCACTCATGCATTGGTGCATTCCGGGCTATATGTAGCAG AAGATGGTGTAGTCTCTACGTTACAAGAATCAAGATCACCATGGTAAGCTTAGCTCAGTAGCTC AGTCCCAGGTCGATCGATGCGTGATTGGGATCTGCAACACAAACGGTTTTCGAGTTCAGGATCA TATCTGCATCCGTGTCAGATAATTGCAGCTTTGGATCTGCAACCAACCTAGGAGTTGGATCAGT CACTTGCAACAGTTGCAAAATTTTGCAATGCAGAGGTTGGGTGCATATGAAGGCACTGGTGTTA TTGTGCATTGAGGCGATAGAATAATAACAGAGAAGACTGACTCACCGTGGACGGCACGGTCTCT AGCTTTGATGCCTCCCTGGCCCATCACCATGTGCAGCAGTAGTAGCAGTAGCAGTAACAATATC TGTAGATCAACCAAGTGCTGGCTCTTGAAGAATAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_006911* osi_circ_016558 						
					
						PMCS
						0.385000749

Conservation Information
Conserved circRNAs	osi_circ_006911* osi_circ_016558
PMCS	0.385000749

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Ye et al., 2015;Chu et al., 2017; this study

circRNA

Detail information of Os06g0680900_circ_g.1

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