Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT4G10570_circ_g.1 |
ID in PlantcircBase | ath_circ_030220 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr4: 6524008-6526496 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT4G10570 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 10 |
Parent gene strand | - |
Alternative splicing | 4_circ_ag.2 4_circ_ag.3 AT4G10570_circ_g.4 4_circ_ag.5 AT4G10570_circ_g.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G10570_circ_g.11 AT4G10570_circ_g.12 AT4G10570_circ_g.13 4_circ_ag.14 AT4G10570_circ_g.15 AT4G10570_circ_g.16 4_circ_ag.17 4_circ_ag.18 AT4G10570_circ_g.19 AT4G10570_circ_g.20 4_circ_ag.21 4_circ_ag.22 4_circ_ag.23 AT4G10590_circ_g.1 AT4G10590_circ_g.2 AT4G10590_circ_g.3 AT4G10590_circ_g.4 |
Support reads | 20 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT4G10570.1:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.162200831 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
6526452-6524010(-) |
Potential amino acid sequence |
MSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGG LAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSS GRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDD EVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITV FYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSA IKDDEHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTD IDAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLT DERGLNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISL FSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFV NFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSST GNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGL SNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNA VAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAE ELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCD GSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDD EHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAV ISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERG LNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCL EAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPV HDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSSTGNEL ALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGLSNLG NTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPR AFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWN YHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRL PMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIV AYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGF LSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERGLNIK PLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFL AEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLD LSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSSTGNELALVP LEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCF MNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKT KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKA RNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPY TVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRL NQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPL HKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERGLNIKPLQS ESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEP LGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKY VKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |