Detail information of AT4G10570_circ_g.1


General Information
CircRNA Name AT4G10570_circ_g.1
ID in PlantcircBase ath_circ_030220
Alias NA
Organism Arabidpsis thaliana
Position chr4: 6524008-6526496  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G10570
Parent gene annotation Ubiquitin carboxyl-terminal hydrolase 10
Parent gene strand -
Alternative splicing 4_circ_ag.2 4_circ_ag.3 AT4G10570_circ_g.4 4_circ_ag.5 AT4G10570_circ_g.6 4_circ_ag.7 4_circ_ag.8 4_circ_ag.9 4_circ_ag.10 AT4G10570_circ_g.11 AT4G10570_circ_g.12 AT4G10570_circ_g.13 4_circ_ag.14 AT4G10570_circ_g.15 AT4G10570_circ_g.16 4_circ_ag.17 4_circ_ag.18 AT4G10570_circ_g.19 AT4G10570_circ_g.20 4_circ_ag.21 4_circ_ag.22 4_circ_ag.23 AT4G10590_circ_g.1 AT4G10590_circ_g.2 AT4G10590_circ_g.3 AT4G10590_circ_g.4
Support reads 20
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT4G10570.1:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGACCTTGAAGGTTCCAGAGGTACCAGAGCTAACTCATTTCCTGTCGAGCTCATAGCAGATTG
AGAGGAGGAAGACAACCCATCAACTTCAACAAGAATcttagcgtaggcagtgtagtggccacca
ccaagtccaccgtaatgattactaacggcatacagttcataaagatatgactggccattcttgt
ttttcaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAGCGTAGGCAGTGTAGTGGCCACCACCAAGTCCACCGTAATGATTACTAACGGCATACAGT
TCATAAAGATATGACTGGCCATTCTTGTTTTTCACATACTTGCTCAAGTCTAGATCATGAACTG
GGAAATTCACAAACGTATCAATCTTGTTCTTCAGATATCTGCTGTAAGTGAACCTTTTTAAATG
AAACACAAGAATATCTGGTAACTTCCACAGGTCTAGCTTTTTGTTCGCTTGTCTGTGTTCTTTG
CAGCTCGGACAAAACCTGATTCAGAACCGTAAGAAAGAGGGTCAAAGCTAAATCTTAAAATGAA
TATATCAGTCCATGTGATTTTAAGTTCAGGCTACGAGTTATACCACATGTCATCTGGTCCCAGA
GGTTCTTCTGCTAAAAAAGCCTCCAAACACGAAAACAGGGATATCGATTCTTGCCTTGTCTTCT
TTGCAGAGAAACTTGTTTTATGAACCTCTGGAAGATCACTCAAGTAGCTGGAATCATATCTTTC
ATGCTCACCCTCATTCCACTCGACTAAAACTCTTGTAACGGTACCCGGGCTTATAGAAGATTCA
GACTGCAGTGGTTTAATGTTCAAACCACGTTCATCTGTCAAGAATATCCTGAAGGATAACTCTC
TATCAGATGCATTGTCTATCTCGGTATCTGGGGATGATAAAATTCCGGATGCTTGGTCAACAGT
AGCATCAGCAAGGTGGCCATTATCACTTCCGTTATGAATCTTAGATGGGGCATGGACCTTGTGC
AGAGGCGACAAAAATCCAGAGATAACTGCATCAATGTCAGTTCCACTTAGTGGTTCTGTGTTGA
CATAAGTCACAAAAGGAGTTCCAAAAAGCTTCACGTCGCTGCCTCTAACACTATCCAGAACAGC
CCTGTGGAACCCAATAATTAAGATTCATAAAGCTTAACAAGAGGACTGAAGAAGAGTTCTTGAG
TAACAAATAAAACCAAAACATGGTTACCTTTCCTGCCCTCCATGAAGAATTTCGAGTTTTGCTT
TTCTTGATCCTTTCGGAATCTGATTCAACCGATACGCCACAATATGCTCATCATCTTTTATCGC
ACTCAGTGAATCCAGGGGAATCTCAAAATATCTAAAGATCTTGTGATCATATACCTGAGAGGAA
AATTACACACAATCTTCAGGGATTTCAGCCCCAAAAAAAAGGATGGAGAAAAAATATTAATACA
AGAAAGGAACAAGCCAAAAATCATACCTCTGCAAGTAAAAGACTCTCATCTTCAGCTAAACAAC
AAGCAGTACCTAATGCGGTAATGAGATCTCTAATAGATCCCTGTTTAGGCACTATTACTGTGTA
TGGCATCGGAAGACGACTTCCATCGCAATAAAACACCGTAATTGTCATGGATCGCGTAAGTGTT
GATGGCAAAGGTACAGACAAGTACATGAAGGGATCAAAAGTGATTGATATTTTTCCGCAAACTG
GACAAACCAGAGTTGACTTGTATTGGCCCTGAAAGAAGTTGAACACCTCATAAGAACTGGTCGG
GAAAATAAAATAGAGAAACTTGTAGTACTTGTATAAAAAACTACAACCAGATGAACATTCAATG
GAAGAAGCGATTAGGAAACGGTAAGAGAGAGACTTACTTGACAGACGTCAACTATTACAGAATC
ATTTCGGGCCTTATGATAATTCCAAAGCTCTTCAGCAACTTCATCATCCGGACGACTGTCAGAA
TCTTTAAGTTCGATGTAAGGTTTTCGTTTGACCTTATTCAAATCTTCATGCAGCCCATCTAATA
AGAAAGCAAGCAGTTCCTAAGACAACAACAATGTCAGGAACAAAGAATCTGATTAATTATGCAC
CATCATACAGATTAGAGGAAATGACTAACTTGAGAATCATGCTGATTGTAACCACTAAACTGTG
GGGCAAATCTAGCCAATTTCGTCTTAAAAGCGCGTGGTGCAACTGCATTCCTTCCTGATGACCA
TAATTTCTTCAACAAATCACCAAACGCGATAGCAAGCTCACCCTGAAAATTAAGAGTTAGAATT
ATATTCAGAATGCATGTGAGTACCATCACGAGGAAATAGAACATGTAAGTATCAAGCACTTACA
CACATTCCCAAAGGATTATCTCTATTTATGTCGTCACTGTAATCTTGCAAGAAGTATTCAACAA
TTGGAGGTGTGTGGGCCAAACACTGAAGAGCGCTATTCATAAAGCAGGTATTTCCCAAATTACT
CAATCCTGCTAATCCTCCCTTTTCTCCTTTTCCAAGAATACTCAAAGAATCTCTGCCGTCGTCT
TCAGAAGTTATTCTCGGAAAGAGACTAAAGTTGGACGTAGTGGAATGACCATTTGATAGGGTAG
GCCCCCCAGCAATTGTAACAATCGACCTTGAAGGTTCCAGAGGTACCAGAGCTAACTCATTTCC
TGTCGAGCTCATAGCAGATTGAGAGGAGGAAGACAACCCATCAACTTCAACAAGAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.162200831
Functional Information
Coding potential Y
Potential coding position 6526452-6524010(-)
Potential amino acid sequence MSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGG
LAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSS
GRNAVAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDD
EVAEELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITV
FYCDGSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSA
IKDDEHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTD
IDAVISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLT
DERGLNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISL
FSCLEAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFV
NFPVHDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSST
GNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGL
SNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNA
VAPRAFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAE
ELWNYHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCD
GSRLPMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDD
EHIVAYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAV
ISGFLSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERG
LNIKPLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCL
EAFLAEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPV
HDLDLSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSSTGNEL
ALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGLSNLG
NTCFMNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPR
AFKTKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWN
YHKARNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRL
PMPYTVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIV
AYRLNQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGF
LSPLHKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERGLNIK
PLQSESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFL
AEEPLGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLD
LSKYVKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAKILVEVDGLSSSSQSAMSSTGNELALVP
LEPSRSIVTIAGGPTLSNGHSTTSNFSLFPRITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCF
MNSALQCLAHTPPIVEYFLQDYSDDINRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKT
KLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKA
RNDSVIVDVCQGQYKSTLVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPY
TVIVPKQGSIRDLITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRL
NQIPKGSRKAKLEILHGGQERAVLDSVRGSDVKLFGTPFVTYVNTEPLSGTDIDAVISGFLSPL
HKVHAPSKIHNGSDNGHLADATVDQASGILSSPDTEIDNASDRELSFRIFLTDERGLNIKPLQS
ESSISPGTVTRVLVEWNEGEHERYDSSYLSDLPEVHKTSFSAKKTRQESISLFSCLEAFLAEEP
LGPDDMWFCPSCKEHRQANKKLDLWKLPDILVFHLKRFTYSRYLKNKIDTFVNFPVHDLDLSKY
VKNKNGQSYLYELYAVSNHYGGLGGGHYTAYAK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017