Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Solyc08g074280.2_circ_g.1 |
| ID in PlantcircBase | sly_circ_002619 |
| Alias | Slcirc124 |
| Organism | Solanum lycopersicum |
| Position | chr8: 58378954-58382956 JBrowse» |
| Reference genome | SL2.50.38 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Solyc08g074280.2 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | - |
| Alternative splicing | Solyc08g074280.2_circ_g.2 |
| Support reads | 15 |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Solyc08g074280.2.1:9 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.127277502 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
58382949-58379419(+) 58382402-58378990(+) 58382922-58382900(-) 58378985-58382900(-) |
| Potential amino acid sequence |
MVPLEEFQHRARHQSLKGEQKLLLGVLEIVFLMLSQ*(+) MRTFIVAESPLRRLRTLPNITISLGKASTGLKRFTSFSLSFIFSCITLIFFNLCSDNIFILSRA SFAGVEERKNTEVTSIACSGTSRRNLSPISANAAKSATWSPWRNSNIELAINL*(+) MGLKFRLDVPEQAMEVTSVFFRSSTPANEALESMKMLSEQRLKNIKVIQEKMKLNEKEVKRFNP VDAFPSDIVIFGRVLNLLRGLSATMNVRIVYIEIMRPFAESVLQCNLNREPALNPRWIYDTPIH SDVEAKLRQLLVELGNAEKILGIQVCAYKDGEVIIDTAAGVLGKYDPRPVQPDSLFSVFSATKG ICAGLVHWLVDNGKLKLEDNIANIWPEFGSNGKDQIKVHHVLNHTSGLHSAMSDINQEDPFLMT DWDECLKRIAMSAPETAPGREQLYHYLSFGWLCGGIIERASGRRFQELLEEVFVRPLKIDGELY VGIPPGGPCSTFGCICRDGTQVSP*(-) MASSMLEFLQGDHVALLAAFAEMGLKFRLDVPEQAMEVTSVFFRSSTPANEALESMKMLSEQRL KNIKVIQEKMKLNEKEVKRFNPVDAFPSDIVIFGRVLNLLRGLSATMNVRIVYIEIMRPFAESV LQCNLNREPALNPRWIYDTPIHSDVEAKLRQLLVELGNAEKILGIQVCAYKDGEVIIDTAAGVL GKYDPRPVQPDSLFSVFSATKGICAGLVHWLVDNGKLKLEDNIANIWPEFGSNGKDQIKVHHVL NHTSGLHSAMSDINQEDPFLMTDWDECLKRIAMSAPETAPGREQLYHYLSFGWLCGGIIERASG RRFQELLEEVFVRPLKIDGELYVGIPPGGPCSTFGCICRDGTQVSP*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Wang et al., 2018b |