Detail information of Solyc08g074280.2_circ_g.1


General Information
CircRNA Name Solyc08g074280.2_circ_g.1
ID in PlantcircBase sly_circ_002619
Alias Slcirc124
Organism Solanum lycopersicum
Position chr8: 58378954-58382956  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc08g074280.2
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing Solyc08g074280.2_circ_g.2
Support reads 15
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc08g074280.2.1:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGAAGAACACAGAAGTAACCTCCATAGCCTGTTCCGGTACGTCAAGGCGAAACTTGAGTCCCAT
CTCTGCAAATGCAGCCAAAAGTGCTACATGGTCCCCctggaggaattccaacatagagctcgcc
atcaatctttaaagggcgaacaaaaacttcttctaggagttcttgaaatcgtcttcctgatgct
ctctgtat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGGAGGAATTCCAACATAGAGCTCGCCATCAATCTTTAAAGGGCGAACAAAAACTTCTTCTAG
GAGTTCTTGAAATCGTCTTCCTGATGCTCTCTGTATTGAGATGACAATAGATAAATGCCTCAAA
GCATGTCAAGATTTTAAAATATACTTGTAGATATATGTTTCTGTAGAGATGCTCCACTACAAGA
ATTCATTAATAAATTCAAAAGAGGAGCCACTAAGAGCTACTGTCAGGATCTTTCTGCAACAAAC
CAATCCCCACTCCTACCGTGAGTCTGTGACCATAAACATGGAGCATAGATGGAAACTTCCTTTC
AACAATTATTAATTAAACATTCTACAATAACATTTAAGCTTTGCATACTTCAGTCGATTCTTAG
GGGTCATGACACAAATAGTGAGCAAAATACTGCAGTCAAATTTTTTTTTTATCAGAAAACATGA
AATGCAACATTACCTCAATAATGCCTCCACATAACCAGCCAAAAGACAAATAATGGTACAGCTG
CTCACGACCTGGTGCAGTTTCTGGAGCAGACATGGCAATTCGCTTCAAACATTCATCCCAATCG
GTCATCAAAAAAGGGTCTTCTTGGTTTATATCACTCATGGCACTATGTAAGCCAGAGGTATGAT
TAAGAACATGATGAACCTGCCAAAATTAACATGCACCCAAATTGACCTAGTTGGAATATAAACA
ATAACAACAAGGACTAAGAAATTGATATTTTCAATTCATTGTGTTGCTTTCTGCAAGTAAATTT
GAATATTTTCTAAAAAATAGAATAACTAACAGTTACCAGTGTTAACTTTATCATATTTGTTTTC
TTTGATCATCCACTCACTAAGAGGGCTCAGAAACAAGATTGTAGTAAAACAAAAATTTCTAAGG
AGGTCTATATCAGATCTATATATACCTTTATTTGGTCTTTTCCATTTGATCCAAATTCAGGCCA
TATATTCGCAATATTGTCCTCAAGCTTCAGCTTTCTGTTAAGATTAAATGTTCTCATTGGTTAA
TTGCAAAAGCTGAAACTTTGTATCATAAATAAAGCTAGAGCACAATATATGTCTCAGACATTGG
TACCTCTTAAAACTTCAAAACAAGCAAGATAAATTAGATGAAAGAATAGAATTACAAGACAGGT
ATAGAAAAGATCAGAGGCATTATCAGATGAATCATAAGACATATCCACCTTGAAGCTCTTAAAG
TCTGAATCAGTATTTTTACATTGAAGTATAAGCAATACTAAGCAACGCGAGGTGCATACCATCT
AAATTTTGATTTTACCAGGAACCTGGCTTCTAATGTAAGAGCATATCGATAAATAAACTCCCAG
TGATGTGCAAGTATGAAGAAATAACGACATGTCTCAATTGTAGGCAAATCTTAAAAAAGAATTA
ACTTTCTTGGTAAGTGAAAAAATAAAGAGGTAAAAAGAGCTTCGAGATATTTAATGGTCCTAGC
AAGATCTTTCTAGGTCTGACCAATATTCGTCTCAAGCTATCTCATTAAAGAAAAATAAGTACAT
TAAGCGTAGAGCAGAGTGGTGTTGCTATTTCTGTATGGTTGCTTTTTCTGTATCAAATACTCCA
ACACTGGAATACATGAACAATTTACAATGGCTTAACAGTTAACAAGGAATAAATCATTTGGATG
GTGCATAATCTTAAGATTCAGAAAATCCTAAATAAAGCTTGGGATATGGCAAAAAAATATGGAG
TACAGGAAAAAACTCTATCCACACCAAAGGGGCAAGATTATAGAGAACAAAAGCACAGAGATCA
GTGGTAGAAACATTACATCCTGACTAATAGTATCAGAAGAAAACGAAAACTAACCGGTCACCAT
CTGAAAAAGTAATTAAATAATAGATAGCATTATGTATTAAGAAAATTTCATTATTTTTATTTTG
TACCATAGCAGATTGATGCAGACATTATTGGAGAAATATAGAAGACTCATTGTTTCATTGGTTT
AAATGATTTAGAAACTTCTGAATTTCATATCCAGAGGACTGAAAATTAGGACATCCAGAGAATA
TATTGAATTTATTAGCATAACATACCCATTATCAACCAGCCAGTGCACCAGTCCAGCACATATT
CCCTTTGTTGCTGAAAAAACAGAGAATAAGCTATCAGGTTGGACTGGTCGAGGATCATATTTTC
CAAGTACCCCAGCAGCAGTATCAATGATCACTTCTCCATCTTTGTAGGCACATACCTTAAAATA
CACAGCAAACAATGAGCAAGCTTGAATCAGTGAAACCCAGGAACAAATCGCAAAATTCATAGAC
CAACTTAATTGGGGAGACATTTCTATATTAGGACATTTGGCAGCAGTATGACTAATCCATGCAG
CTAGGATCGTTAAATCACTTCATTAAAAGAAATGTGGAAAACAACATCCTATTCTAAGTTGATA
AGTCCCAATATAATATCAGAAACCCAAATGAAACATTGAATAAGAACCTGAACTTCTACAAGAG
TTGAGTACATATCCGATTAATAGCAGTACAGAGTTTGACAAAAATTATCCATTCCTATTCACTT
AAAGAACTCTCAGATCAATTCAACAGCTGCAATGACTAACTGATGTCCTTGTGAGAAATATATG
AGAAAATATTATTGAATTGTGTATCTAAATTGTTACATTGAGACCCTATTTATATACACTTCAT
TGGAACCCTTTTCCGACTAGGATTCCTATTCCTATTCTTATTCCTATTTCTATTCTAAGTAGGA
AATACTAATTTCTATTGTAACACTTCTCTATCTGAAGCATCCACATGGCTCACATAGACGTTTC
CAGTGCTTTTTTCACTCATCTCATCTCTCAGAATTGTAAGATGTCCAGTTGATATTCACAGTAG
CTGATTGCTCAATCTTCTGTATTAATCTTGTGCTTTCTCTTTATTTCAAGGTACATCTTACTTG
TACACCAACCCTAAACTGAAAAGGTACTCCATACTTTATACTAAATTTTATTCTCTTTGACTGA
GTGTTCAATCAAAACTTATCTTGACTAAATACCCTTTACTTTTTTGCTGCGGCAAGAAATTGCA
TCCTACAGCACCAATAGTGTTGGCTGCCCCTGCAAGGAAGAGTTGTCTACAAAGCCATTGGGAA
GGGGATCAAGGTGGCAGGATAATCAGACTGCAAAGACATAGCAATTACGAGTATGTACCTGGAT
TCCAAGTATTTTCTCAGCATTCCCAAGCTCAACCAAAAGTTGCCTTAGTTTGGCTTCAACATCA
GAATGAATTGGGGTGTCATAGATCCATCGTGGATTCAAAGCTGGCTCTCTATTTAAGTTGCTGT
ACAAGTTGCCAAATACTTAATGAGCAACGGATCCAGTGATATACGTAAAATAAGCACAAAACAG
AACTAACCATTGGAGCACAGATTCAGCAAAAGGCCGCATGATTTCTATATAAACTATGCGCACA
TTCATTGTTGCAGAAAGCCCTGAGAATCACCGACAACCACTGAGTCAGTTGTTCGCACTTAGAG
GATACAAAGAGGAGATAAAAGAGAACATTCATCACAAACCTCTAAGAAGATTAAGAACCCTCCC
GAATATAACAATATCACTAGGAAAAGCATCAACCTGGAAAAAATTGTCAGCTGGTCAGAATCAT
CTAAGTCAGATTAATAATTCAGTCACTAGTGATTGAAAAAAGTTAAAAGCTTACAGGATTAAAG
CGTTTCACTTCCTTCTCATTGAGTTTCATCTTTTCTTGTATAACCTTGATATTTTTTAACCTTT
GCTCAGATAACATTTTCATACTTTCCTTCATCAAATTGAGAGATAAGTCAGACGAGGGAAATTG
GATAGAAATAACCAACCAAAAAGAGAAAGCTTACAAGAGCTTCATTTGCAGGCGTGGAAGAACG
GAAGAACACAGAAGTAACCTCCATAGCCTGTTCCGGTACGTCAAGGCGAAACTTGAGTCCCATC
TCTGCAAATGCAGCCAAAAGTGCTACATGGTCCCC
Conservation Information
Conserved circRNAs NA
PMCS 0.127277502
Functional Information
Coding potential Y
Potential coding position 58382949-58379419(+)
58382402-58378990(+)
58382922-58382900(-)
58378985-58382900(-)
Potential amino acid sequence MVPLEEFQHRARHQSLKGEQKLLLGVLEIVFLMLSQ*(+)
MRTFIVAESPLRRLRTLPNITISLGKASTGLKRFTSFSLSFIFSCITLIFFNLCSDNIFILSRA
SFAGVEERKNTEVTSIACSGTSRRNLSPISANAAKSATWSPWRNSNIELAINL*(+)
MGLKFRLDVPEQAMEVTSVFFRSSTPANEALESMKMLSEQRLKNIKVIQEKMKLNEKEVKRFNP
VDAFPSDIVIFGRVLNLLRGLSATMNVRIVYIEIMRPFAESVLQCNLNREPALNPRWIYDTPIH
SDVEAKLRQLLVELGNAEKILGIQVCAYKDGEVIIDTAAGVLGKYDPRPVQPDSLFSVFSATKG
ICAGLVHWLVDNGKLKLEDNIANIWPEFGSNGKDQIKVHHVLNHTSGLHSAMSDINQEDPFLMT
DWDECLKRIAMSAPETAPGREQLYHYLSFGWLCGGIIERASGRRFQELLEEVFVRPLKIDGELY
VGIPPGGPCSTFGCICRDGTQVSP*(-)
MASSMLEFLQGDHVALLAAFAEMGLKFRLDVPEQAMEVTSVFFRSSTPANEALESMKMLSEQRL
KNIKVIQEKMKLNEKEVKRFNPVDAFPSDIVIFGRVLNLLRGLSATMNVRIVYIEIMRPFAESV
LQCNLNREPALNPRWIYDTPIHSDVEAKLRQLLVELGNAEKILGIQVCAYKDGEVIIDTAAGVL
GKYDPRPVQPDSLFSVFSATKGICAGLVHWLVDNGKLKLEDNIANIWPEFGSNGKDQIKVHHVL
NHTSGLHSAMSDINQEDPFLMTDWDECLKRIAMSAPETAPGREQLYHYLSFGWLCGGIIERASG
RRFQELLEEVFVRPLKIDGELYVGIPPGGPCSTFGCICRDGTQVSP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2018b