Plant Circular RNA Database

Detail information of Os07g0194800_circ_g.4

			
						 General Information
					
						CircRNA Name
						Os07g0194800_circ_g.4
					
						ID in PlantcircBase
						osa_circ_033119
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr7: 5130363-5131194  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os07g0194800						
					
						Parent gene annotation
						
							Similar to galactosyltransferase/ transferase, transferring hexo
syl groups. (Os07t0194800-01);Similar to Galactosyltransferase/ 
transferase, transferring hexosyl groups. (Os07t0194800-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os07g0194800_circ_g.1 Os07g0194800_circ_g.2 Os07g0194800_circ_g.3 						
					
						Support reads
						2
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os07t0194800-02:3
Os07t0194800-01:3

General Information
CircRNA Name	Os07g0194800_circ_g.4
ID in PlantcircBase	osa_circ_033119
Alias	NA
Organism	Oryza sativa
Position	chr7: 5130363-5131194 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os07g0194800
Parent gene annotation	Similar to galactosyltransferase/ transferase, transferring hexo syl groups. (Os07t0194800-01);Similar to Galactosyltransferase/ transferase, transferring hexosyl groups. (Os07t0194800-02)
Parent gene strand	-
Alternative splicing	Os07g0194800_circ_g.1 Os07g0194800_circ_g.2 Os07g0194800_circ_g.3
Support reads	2
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os07t0194800-02:3 Os07t0194800-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GGCCTACCAATTAGACGCTTTACCCACCACTTCATCTTCGATTCCTCAGACTTCTTGTCGTCGT
CACGAATCCATTTCTCACACTTAAGTTGGCCATCAAcccatactcagcaatagcaatggtcttc
aaaacaacaaggtcatagctatccatgaaaggaactataacaatgtcttgaaagaactctgctt
cccttttc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 191
Transcript exons: 5130363-5130482,5131124-5131194
CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT
ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTCTTCATCT
TCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGTTGGCCATCAA
Transcript length: 650
Transcript exons: 5130363-5130491,5130570-5130857,5130962-5131194
CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT
ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTTTTCCCAT
TCAGAGCCACAAAGAACCGAGCTACTATATTAGTCGATTTCCTTGTATACATCATCCACGACTT
CCGTACAGCCATCCGCTCAGCAAAATGGCTGGCTGCTGAAAGAATACCAATAAAAAGCTCAACA
GGCTCAGTTGGTAGTGGTGGTGCCCTCCACTGTTCAGACATTTCAAGGTATCTCTCTGGGGCAA
AACTAGGATGCGAATTGGGCAGGGAACTAGCAAAAATGGATTCGATATCGATGTCTCCATTCAG
AGATAAGCCGGTTGCATCCTCAAGAGTGTAACCAGTGCGATAAGGAAAGGAAGTAACATGCCGC
CCATCAACATTGACATGGTAACCTTCCAAACCAGCTGTTAGAGTCAAAACAAACAGCTTGCCTT
CTGCGAAGGGGTATGGCCAACTGATGTGCACATCCTTTGGCCTACCAATTAGACGCTTTACCCA
CCACTTCATCTTCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGT
TGGCCATCAA
						
					

						Genomic sequence
						
							CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT
ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTTTTCCCAT
TCTGTAAATTTACTTTAATTGGTTAGATTATGAATTTACTCAAAAGAGTAGTAAAACCATTAAG
TCAATCGATAGTTACCAGAGCCACAAAGAACCGAGCTACTATATTAGTCGATTTCCTTGTATAC
ATCATCCACGACTTCCGTACAGCCATCCGCTCAGCAAAATGGCTGGCTGCTGAAAGAATACCAA
TAAAAAGCTCAACAGGCTCAGTTGGTAGTGGTGGTGCCCTCCACTGTTCAGACATTTCAAGGTA
TCTCTCTGGGGCAAAACTAGGATGCGAATTGGGCAGGGAACTAGCAAAAATGGATTCGATATCG
ATGTCTCCATTCAGAGATAAGCCGGTTGCATCCTCAAGAGTGTAACCCTGCAGAGACCATTAGT
TGGGCAAAATTAGTTATGGAGATCTCAGGATGGTGCTCAAGAACTCATGCAACTGAATGACTTT
TTGATGCTTTAAGAAAAACCTACAGTGCGATAAGGAAAGGAAGTAACATGCCGCCCATCAACAT
TGACATGGTAACCTTCCAAACCAGCTGTTAGAGTCAAAACAAACAGCTTGCCTTCTGCGAAGGG
GTATGGCCAACTGATGTGCACATCCTTTGGCCTACCAATTAGACGCTTTACCCACCACTTCATC
TTCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGTTGGCCATCAA
						
					

			
		

Sequences
Splice junction sequence	GGCCTACCAATTAGACGCTTTACCCACCACTTCATCTTCGATTCCTCAGACTTCTTGTCGTCGT CACGAATCCATTTCTCACACTTAAGTTGGCCATCAAcccatactcagcaatagcaatggtcttc aaaacaacaaggtcatagctatccatgaaaggaactataacaatgtcttgaaagaactctgctt cccttttc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 191 Transcript exons: 5130363-5130482,5131124-5131194 CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTCTTCATCT TCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGTTGGCCATCAA Transcript length: 650 Transcript exons: 5130363-5130491,5130570-5130857,5130962-5131194 CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTTTTCCCAT TCAGAGCCACAAAGAACCGAGCTACTATATTAGTCGATTTCCTTGTATACATCATCCACGACTT CCGTACAGCCATCCGCTCAGCAAAATGGCTGGCTGCTGAAAGAATACCAATAAAAAGCTCAACA GGCTCAGTTGGTAGTGGTGGTGCCCTCCACTGTTCAGACATTTCAAGGTATCTCTCTGGGGCAA AACTAGGATGCGAATTGGGCAGGGAACTAGCAAAAATGGATTCGATATCGATGTCTCCATTCAG AGATAAGCCGGTTGCATCCTCAAGAGTGTAACCAGTGCGATAAGGAAAGGAAGTAACATGCCGC CCATCAACATTGACATGGTAACCTTCCAAACCAGCTGTTAGAGTCAAAACAAACAGCTTGCCTT CTGCGAAGGGGTATGGCCAACTGATGTGCACATCCTTTGGCCTACCAATTAGACGCTTTACCCA CCACTTCATCTTCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGT TGGCCATCAA
Genomic sequence	CCCATACTCAGCAATAGCAATGGTCTTCAAAACAACAAGGTCATAGCTATCCATGAAAGGAACT ATAACAATGTCTTGAAAGAACTCTGCTTCCCTTTTCAGCTCTGCATTAACCTCCTTTTTCCCAT TCTGTAAATTTACTTTAATTGGTTAGATTATGAATTTACTCAAAAGAGTAGTAAAACCATTAAG TCAATCGATAGTTACCAGAGCCACAAAGAACCGAGCTACTATATTAGTCGATTTCCTTGTATAC ATCATCCACGACTTCCGTACAGCCATCCGCTCAGCAAAATGGCTGGCTGCTGAAAGAATACCAA TAAAAAGCTCAACAGGCTCAGTTGGTAGTGGTGGTGCCCTCCACTGTTCAGACATTTCAAGGTA TCTCTCTGGGGCAAAACTAGGATGCGAATTGGGCAGGGAACTAGCAAAAATGGATTCGATATCG ATGTCTCCATTCAGAGATAAGCCGGTTGCATCCTCAAGAGTGTAACCCTGCAGAGACCATTAGT TGGGCAAAATTAGTTATGGAGATCTCAGGATGGTGCTCAAGAACTCATGCAACTGAATGACTTT TTGATGCTTTAAGAAAAACCTACAGTGCGATAAGGAAAGGAAGTAACATGCCGCCCATCAACAT TGACATGGTAACCTTCCAAACCAGCTGTTAGAGTCAAAACAAACAGCTTGCCTTCTGCGAAGGG GTATGGCCAACTGATGTGCACATCCTTTGGCCTACCAATTAGACGCTTTACCCACCACTTCATC TTCGATTCCTCAGACTTCTTGTCGTCGTCACGAATCCATTTCTCACACTTAAGTTGGCCATCAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_017619 						
					
						PMCS
						0.511940284

Conservation Information
Conserved circRNAs	osi_circ_017619
PMCS	0.511940284

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							5131081-5130376(+)
5131131-5131128(-)
						
						Potential amino acid sequence
						
							MCTSFGLPIRRFTHHFIFDSSDFLSSSRIHFSHLSWPSTHTQQ*(+)
MKWWVKRLIGRPKDVHISWPYPFAEGKLFVLTLTAGLEGYHVNVDGRHVTSFPYRTGYTLEDAT
GLSLNGDIDIESIFASSLPNSHPSFAPERYLEMSEQWRAPPLPTEPVELFIGILSAASHFAERM
AVRKSWMMYTRKSTNIVARFFVALNGKKEVNAELKREAEFFQDIVIVPFMDSYDLVVLKTIAIA
EYGLMANLSVRNGFVTTTRSLRNRR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	5131081-5130376(+) 5131131-5131128(-)
Potential amino acid sequence	MCTSFGLPIRRFTHHFIFDSSDFLSSSRIHFSHLSWPSTHTQQ(+) MKWWVKRLIGRPKDVHISWPYPFAEGKLFVLTLTAGLEGYHVNVDGRHVTSFPYRTGYTLEDAT GLSLNGDIDIESIFASSLPNSHPSFAPERYLEMSEQWRAPPLPTEPVELFIGILSAASHFAERM AVRKSWMMYTRKSTNIVARFFVALNGKKEVNAELKREAEFFQDIVIVPFMDSYDLVVLKTIAIA EYGLMANLSVRNGFVTTTRSLRNRR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os07g0194800_circ_g.4

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