Detail information of Os02g0639800_circ_g.1


General Information
CircRNA Name Os02g0639800_circ_g.1
ID in PlantcircBase osa_circ_015747
Alias NA
Organism Oryza sativa
Position chr2: 25672785-25676914  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os02g0639800
Parent gene annotation Hypothetical gene. (Os02t0639800-01);Zinc finger, RING/FYVE/PHD-
type domain containing protein. (Os02t0639800-02);Hypothetical g
ene. (Os02t0639800-03);Zinc finger, RING/FYVE/PHD-type domain co
ntaining protein. (Os02t0639800-04);Zinc finger, RING/FYVE/PHD-t
ype domain containing protein. (Os02t0639800-05)
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   CT-TC
Number of exons covered Os02t0639800-01:1
Os02t0639800-05:1
Os02t0639800-03:1
Os02t0639800-04:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGATCAGATGAGATCACTAGTTCATTACACCATCGCATCACCAACAATCAACAAAGCACACGG
AGCAATCAGCAAACAGGAGTATGGTTGGTGGCTGACagaccattataagtttataaccgacgac
aaaagaagatggattgatcagcgagcaagagagaaaaacaagcacactgtccacaccaatccct
caccatga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 4130
Transcript exons: 25672785-25676914
AGACCATTATAAGTTTATAACCGACGACAAAAGAAGATGGATTGATCAGCGAGCAAGAGAGAAA
AACAAGCACACTGTCCACACCAATCCCTCACCATGATTGGTCACCGAAACGTGTACGATGACCG
GTCAGAATTCAGGCAAAGCAAGTTGTACCGTTTTGTCCGTGCGACCGGTTCGTGTGCTGGTGAT
AGGCCGCTGGCAGCAAAAATGGACAGTGGAACTAACCACAAGAAGACCAAAACCGTAGGGTTTT
CTGTCTGAGGACGTTGTTTAGTCCTAACTAGTCTGTCCAAATCCAGAAGGTCCCACGTCGATCA
GACAAGATATTTTCAGATAAAGCAGAGGATTTAAATAAGGCTCCATGCCTCCATACCAAATATA
AACAACCACAGGGCAAATTGTATAAGAAAACTACTATTGATTAAATTTTACTTTTTCTAAAAAA
AATTGTTCGGTCATACTACTAGTTTAGCTTCGATCTATATGTTGCTATCACATCCAGTCATCCA
CTACGGTGGTTCGATTGTAGAAATGTCATTGATGATTGATTGCATTGCGGATTTACACGGTCAC
CGGTCACCACACCAGTCGGTAAAACTAGTCTGATTGCCCAACCTGAAGTGGATACAAGAATCTT
ACAGGTCAAAACCCGTAATTATCAACCCGAATTTTGCATTTGTTTATCTTTGCAAAAACAATAA
CAAGAAGAAGAGAGTTTGCCTTTGTTTTTTATAGAAAATAGACTTGCTATTGCCTTGAGAGGAA
AGCAAAGAAGAAAGCAATTAAGCAATCCGGCATTTATAATCTGCTTACGCTCGATTTAATTTGG
ACAACGCCACCAGGTCGCTGAAACACTGACCGGATTAGCACCACTATTTTTTGTCAAGAAAAAA
TAAGAGATGATCAGTGACCACACAGCGAATTGTACGGAGAAGAAGACAGCTTGCCGACCCCAAA
GCCCAACCTGATCTTGCTCCATAAGTATGATTATCTCTGTGTTTTTTTTTCCTTCAAAGAAACT
GAGCCGTCAATCGGTTCTTTATCTATGTTAATAAACCGAAAAGCAAACGATGAAGTGGTGTAAT
AATATATGGAATAACTAGATTCCTGACTCCATATGTAGCACTTGACGTATTCAAGCGACTGAAC
AAAACCAAAGAGAAAAGCACATCATTTCTTATTATATAGTTTTAAATCATATCTAGTGATCAGG
GAAGATGATGATTCAATCTTGTGATAAGATCAGGAAACAACAAATATTCGGCCAACAACTTGGA
GTTGTTTTTTCTTAAATAATATTAGCCCATATCCACAGACGATATGTGCAGTCAGAACTAAGGT
GCCTATATGCATTTCTCTCCTTTCCTTATCATACATACAGCTCCAAGCACGTCGTTTTTCTACA
GTTGTCCAGCTAGCGTTTTTGTGGCCAAGAAACAAAGTACTGATGAATAGTACGAATCATGAAA
ATGAGATCAACCAAGATACATCACAAAATTGCTAATGGTACCCCAAGGCTACAAATAAAAATGC
ACAAGCAGAAAAGTTCAGTAGAACTGTGCAAAGCTTAGTTGCATTGATGCAGCTTTTCATTGTC
AAATTGTTTGTGTGCCACAATATCAATATGATTAAACTTACACAGATATAGGTTATTCGGATTA
GTACCAAACAAGAATCATTCCATCTACACATTTATCAGGTATACTCAATCGACGTGTAAGTAAA
GAGTGGAAGCAACATCTTAATTATTCCTTCTAATTTTCCAATAGGGTTAAGGCTGTCAGTTACA
CTTCCCATCAAAGAAAGGATAACCACATGTAAACGGCCTTGAGATAAATCACAAGAACAAATGG
GTGAAACATAAAACTAGTAACAAACTTCTGTTTAGCATGCAAATGAATTAAGATGGAGAAACCA
AGGCATATAATTACTACCATGTTTATGAGTTTATCCTAAAAGATTTGGTGACACAACAGGGCTG
AAGACAAATCTGGCAAAATGCGCAATTACACCAATCCGGTGTAGCGAGCAGCAGCTCCAATTGA
TCACCGACATCCTTCGCTGCAAGATAGAGCAATTCCCAATTATATACTTGGGGATACCGCTATC
CATGAGAAGACCAACAAAGATGGAGTTGCAACCAATCCTTGATAAGCTTGCAAAAAAGGTAGCT
GGTTGGAAGCCAAGGATGCTATCACACGATGGCAGATTATGCTTGATCAAATCAACAATGATGG
CCCTCCCTGTACACACAATGTCAGTGATTCAGCTGCCTAAATGGGCGATAAAAGAAATTGAACG
CAAATGCAGGGGATTCCTTTGGAAAGGGCAAGAGGAAGTGAGCGGTGGACACTGCTTGGTCGCG
TGGAAAAACGTCTGTATGCCAGTGGAAAATGGGGGGCTGGGGATCAAGAATTTGGAATACTTTG
GTCATGCATTGCGGCTAAAATGGCAGGTCACCAAGCTACAGCACAAGAACAGACCATGGTCTAT
GGTGGACTTTCAACTTGGAGGGGAAGTGGAGAAAATTTTCCAATCAATGGCTGAGTTCATCGTC
GGGAATGGACAAAACACAAAATTTTGGACTTCAAATTGGCTTGGGGGAGGCAGCATTGCCTGGA
GGTGGCCCATTCTATCGACTTATGTGGGCAGATCAAATCTGTCCGTGGCACAAGCTCTAACAGG
CAACAGATGGGTGAGAGATCTTCGTGGCTCCCTCTCAAACGAAGCCCTAGCCCAATACTTCGAG
CTATGGAGTGAGCTACAGACGATACACCTAAGTCAAGAAGAAGACAGCATTAGATGGAAACTAA
CGCCAGATGGCCAATTCTCAAGCACATCAGCTTATGATCTGTTCTTCAAATCAATGGAGCTGTG
CCCGGTGGGAGAACTAATATGGCATGCGAAGGCACCATCTAAAATTCGATTCTTCATGTGGTTG
GCCACAAAGGGGCGCTGTCTAACTGCTGATAATCTTCAGAAGAGGGGTTGGCCACACTCTGACT
GCTGCACTCTGTGCACACGAGAATCTGAAGATTGCGCACATCTGTTCAGTAAATGCGTTTATAC
AGTGAGAGTTTGGAGTTTGTTGCGCAATTGGATCAACGTTCCCTTCCCCATTCCTGGGAGAAGC
GAACTTGGGCTCACTGAGTGGTGGATGCAGGCCAGGCTGCGTTTTCGGCACTGCTACAGGGACA
ACTTCGACAGTGTGTGCATGCTAGTTTGCTGGACAGTTTGGAAAGAGAGGAATGCCCGTGTGTT
TGATCAGCGGTCGAGGATCCCTGAACAGTTGGCCGAAGCAATCAAAGAAGAGGTTCTTCTGTGG
AAGGAAGCAGGTTATTTTGAGACAAACAATAGTTAGCACATTTTCCTTGTTTGTGGTTTGATTT
TATTTCAGCTTACTGGGGCTGAGGCTAAGCCTTGGTCCCATCTCAACAGCCTCCTGTTGTTGTA
AGCAAAATTTGTATTTTTCTCCCCTCAAATCTTAATGAAATTCGCTCGCCGGTTCCTTCGGCCG
ACCCGGCAAAAAAAGTTTATCCTAAAAGAGTAGTAATCGTATCTTGATTGATTAAATGAAAACC
AAGAACAAAGATACACTGACATGATTTCCTGTCCTAACACACATACACTACGACGGCTTAAAAT
TTCGAACCTGCCTACAATGAACAATATTAGTTGACCAAATTAGCACAGTTCATATTTTATAAAG
AAACTGTGCTTGGCTCAAAGATAACATACTGCAATCAACTGCATCAAGCCATCAACAAGTCTGA
AAGAACACGGGTGCATAATTGACCAAGACCAAAACTCGGCCCATTGGCCATTGCGAATCAGTTT
CTCATTTCATTTCTCTACTTTTAAATGATCTAGAAGCATGGCTAAAAAGCAGTAAGGGCAAAGC
TCCAACCCTGAATCAACTACAAACAGAATCATATGCACTCAAACTCGCAAGAATTCACCTGATC
GATTGAAACAACAGCAGGCACCAGCAAAAGAAACCAGAGGCGCCGACTCAAAAACCAAGAACAC
GATCAGATGAGATCACTAGTTCATTACACCATCGCATCACCAACAATCAACAAAGCACACGGAG
CAATCAGCAAACAGGAGTATGGTTGGTGGCTGAC

Genomic sequence AGACCATTATAAGTTTATAACCGACGACAAAAGAAGATGGATTGATCAGCGAGCAAGAGAGAAA
AACAAGCACACTGTCCACACCAATCCCTCACCATGATTGGTCACCGAAACGTGTACGATGACCG
GTCAGAATTCAGGCAAAGCAAGTTGTACCGTTTTGTCCGTGCGACCGGTTCGTGTGCTGGTGAT
AGGCCGCTGGCAGCAAAAATGGACAGTGGAACTAACCACAAGAAGACCAAAACCGTAGGGTTTT
CTGTCTGAGGACGTTGTTTAGTCCTAACTAGTCTGTCCAAATCCAGAAGGTCCCACGTCGATCA
GACAAGATATTTTCAGATAAAGCAGAGGATTTAAATAAGGCTCCATGCCTCCATACCAAATATA
AACAACCACAGGGCAAATTGTATAAGAAAACTACTATTGATTAAATTTTACTTTTTCTAAAAAA
AATTGTTCGGTCATACTACTAGTTTAGCTTCGATCTATATGTTGCTATCACATCCAGTCATCCA
CTACGGTGGTTCGATTGTAGAAATGTCATTGATGATTGATTGCATTGCGGATTTACACGGTCAC
CGGTCACCACACCAGTCGGTAAAACTAGTCTGATTGCCCAACCTGAAGTGGATACAAGAATCTT
ACAGGTCAAAACCCGTAATTATCAACCCGAATTTTGCATTTGTTTATCTTTGCAAAAACAATAA
CAAGAAGAAGAGAGTTTGCCTTTGTTTTTTATAGAAAATAGACTTGCTATTGCCTTGAGAGGAA
AGCAAAGAAGAAAGCAATTAAGCAATCCGGCATTTATAATCTGCTTACGCTCGATTTAATTTGG
ACAACGCCACCAGGTCGCTGAAACACTGACCGGATTAGCACCACTATTTTTTGTCAAGAAAAAA
TAAGAGATGATCAGTGACCACACAGCGAATTGTACGGAGAAGAAGACAGCTTGCCGACCCCAAA
GCCCAACCTGATCTTGCTCCATAAGTATGATTATCTCTGTGTTTTTTTTTCCTTCAAAGAAACT
GAGCCGTCAATCGGTTCTTTATCTATGTTAATAAACCGAAAAGCAAACGATGAAGTGGTGTAAT
AATATATGGAATAACTAGATTCCTGACTCCATATGTAGCACTTGACGTATTCAAGCGACTGAAC
AAAACCAAAGAGAAAAGCACATCATTTCTTATTATATAGTTTTAAATCATATCTAGTGATCAGG
GAAGATGATGATTCAATCTTGTGATAAGATCAGGAAACAACAAATATTCGGCCAACAACTTGGA
GTTGTTTTTTCTTAAATAATATTAGCCCATATCCACAGACGATATGTGCAGTCAGAACTAAGGT
GCCTATATGCATTTCTCTCCTTTCCTTATCATACATACAGCTCCAAGCACGTCGTTTTTCTACA
GTTGTCCAGCTAGCGTTTTTGTGGCCAAGAAACAAAGTACTGATGAATAGTACGAATCATGAAA
ATGAGATCAACCAAGATACATCACAAAATTGCTAATGGTACCCCAAGGCTACAAATAAAAATGC
ACAAGCAGAAAAGTTCAGTAGAACTGTGCAAAGCTTAGTTGCATTGATGCAGCTTTTCATTGTC
AAATTGTTTGTGTGCCACAATATCAATATGATTAAACTTACACAGATATAGGTTATTCGGATTA
GTACCAAACAAGAATCATTCCATCTACACATTTATCAGGTATACTCAATCGACGTGTAAGTAAA
GAGTGGAAGCAACATCTTAATTATTCCTTCTAATTTTCCAATAGGGTTAAGGCTGTCAGTTACA
CTTCCCATCAAAGAAAGGATAACCACATGTAAACGGCCTTGAGATAAATCACAAGAACAAATGG
GTGAAACATAAAACTAGTAACAAACTTCTGTTTAGCATGCAAATGAATTAAGATGGAGAAACCA
AGGCATATAATTACTACCATGTTTATGAGTTTATCCTAAAAGATTTGGTGACACAACAGGGCTG
AAGACAAATCTGGCAAAATGCGCAATTACACCAATCCGGTGTAGCGAGCAGCAGCTCCAATTGA
TCACCGACATCCTTCGCTGCAAGATAGAGCAATTCCCAATTATATACTTGGGGATACCGCTATC
CATGAGAAGACCAACAAAGATGGAGTTGCAACCAATCCTTGATAAGCTTGCAAAAAAGGTAGCT
GGTTGGAAGCCAAGGATGCTATCACACGATGGCAGATTATGCTTGATCAAATCAACAATGATGG
CCCTCCCTGTACACACAATGTCAGTGATTCAGCTGCCTAAATGGGCGATAAAAGAAATTGAACG
CAAATGCAGGGGATTCCTTTGGAAAGGGCAAGAGGAAGTGAGCGGTGGACACTGCTTGGTCGCG
TGGAAAAACGTCTGTATGCCAGTGGAAAATGGGGGGCTGGGGATCAAGAATTTGGAATACTTTG
GTCATGCATTGCGGCTAAAATGGCAGGTCACCAAGCTACAGCACAAGAACAGACCATGGTCTAT
GGTGGACTTTCAACTTGGAGGGGAAGTGGAGAAAATTTTCCAATCAATGGCTGAGTTCATCGTC
GGGAATGGACAAAACACAAAATTTTGGACTTCAAATTGGCTTGGGGGAGGCAGCATTGCCTGGA
GGTGGCCCATTCTATCGACTTATGTGGGCAGATCAAATCTGTCCGTGGCACAAGCTCTAACAGG
CAACAGATGGGTGAGAGATCTTCGTGGCTCCCTCTCAAACGAAGCCCTAGCCCAATACTTCGAG
CTATGGAGTGAGCTACAGACGATACACCTAAGTCAAGAAGAAGACAGCATTAGATGGAAACTAA
CGCCAGATGGCCAATTCTCAAGCACATCAGCTTATGATCTGTTCTTCAAATCAATGGAGCTGTG
CCCGGTGGGAGAACTAATATGGCATGCGAAGGCACCATCTAAAATTCGATTCTTCATGTGGTTG
GCCACAAAGGGGCGCTGTCTAACTGCTGATAATCTTCAGAAGAGGGGTTGGCCACACTCTGACT
GCTGCACTCTGTGCACACGAGAATCTGAAGATTGCGCACATCTGTTCAGTAAATGCGTTTATAC
AGTGAGAGTTTGGAGTTTGTTGCGCAATTGGATCAACGTTCCCTTCCCCATTCCTGGGAGAAGC
GAACTTGGGCTCACTGAGTGGTGGATGCAGGCCAGGCTGCGTTTTCGGCACTGCTACAGGGACA
ACTTCGACAGTGTGTGCATGCTAGTTTGCTGGACAGTTTGGAAAGAGAGGAATGCCCGTGTGTT
TGATCAGCGGTCGAGGATCCCTGAACAGTTGGCCGAAGCAATCAAAGAAGAGGTTCTTCTGTGG
AAGGAAGCAGGTTATTTTGAGACAAACAATAGTTAGCACATTTTCCTTGTTTGTGGTTTGATTT
TATTTCAGCTTACTGGGGCTGAGGCTAAGCCTTGGTCCCATCTCAACAGCCTCCTGTTGTTGTA
AGCAAAATTTGTATTTTTCTCCCCTCAAATCTTAATGAAATTCGCTCGCCGGTTCCTTCGGCCG
ACCCGGCAAAAAAAGTTTATCCTAAAAGAGTAGTAATCGTATCTTGATTGATTAAATGAAAACC
AAGAACAAAGATACACTGACATGATTTCCTGTCCTAACACACATACACTACGACGGCTTAAAAT
TTCGAACCTGCCTACAATGAACAATATTAGTTGACCAAATTAGCACAGTTCATATTTTATAAAG
AAACTGTGCTTGGCTCAAAGATAACATACTGCAATCAACTGCATCAAGCCATCAACAAGTCTGA
AAGAACACGGGTGCATAATTGACCAAGACCAAAACTCGGCCCATTGGCCATTGCGAATCAGTTT
CTCATTTCATTTCTCTACTTTTAAATGATCTAGAAGCATGGCTAAAAAGCAGTAAGGGCAAAGC
TCCAACCCTGAATCAACTACAAACAGAATCATATGCACTCAAACTCGCAAGAATTCACCTGATC
GATTGAAACAACAGCAGGCACCAGCAAAAGAAACCAGAGGCGCCGACTCAAAAACCAAGAACAC
GATCAGATGAGATCACTAGTTCATTACACCATCGCATCACCAACAATCAACAAAGCACACGGAG
CAATCAGCAAACAGGAGTATGGTTGGTGGCTGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.296658196
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017