Detail information of AT4G02570_circ_g.9


General Information
CircRNA Name AT4G02570_circ_g.9
ID in PlantcircBase ath_circ_029416
Alias NA
Organism Arabidpsis thaliana
Position chr4: 1129806-1132676  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT4G02570
Parent gene annotation AT4G02570 protein
Parent gene strand +
Alternative splicing AT4G02570_circ_g.4 AT4G02570_circ_g.5 AT4G02570_circ_g.6 AT4G02570_circ_g.7 AT4G02570_circ_g.8 AT4G02570_circ_g.10 AT4G02570_circ_g.11 AT4G02570_circ_g.12 AT4G02570_circ_g.13 AT4G02570_circ_g.14 AT4G02570_circ_g.15
Support reads 36
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT4G02570.2:14
AT4G02570.1:14
AT4G02570.3:14
AT4G02570.4:14
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAACACAGGAAGCTTACGTGGATCTATTCACTGGGAACTTGTCACATAAACGGGAAGTTTGAT
CAAAAGGCCATCGAGTTAATAGTGTCTACTTACCAGgttttgcctgcgttgagggagaagcatg
atgagtttatgctgcgggagctatttaaaagatggtcaaaccataaagtaatggtcagatggct
atcccgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTTGCCTGCGTTGAGGGAGAAGCATGATGAGTTTATGCTGCGGGAGCTATTTAAAAGATGGT
CAAACCATAAAGTAATGGTCAGATGGCTATCCCGCTTCTTCTACTACCTTGACCGTTACTTCAT
TGCTCGGAGATCACTTCCACCACTGAATGAAGTTGGCCTGACATGCTTCCGTGACCTGGTATGG
CATTCATTCCTGTGGCTTTATAGCTTTCAGTTGTATTGAAATATTTTTAACTTTTCCTTGATTC
TGTTCGCTTCAGGTTTATAATGAGCTACATTCTAAGGTCAAACAAGCTGTAATAGCTCTTGTAA
GTATGGCGTCAATATTGTTGTGCAGTTACATCCAACTCTGGCTTTTGCCTGATTCAAGGTCTAA
CATGACCTGTTCTTCTGTCAGGTTGATAAAGAACGGGAGGGCGAGCAGATTGATAGGGCCCTGC
TGAAAAACGTATTAGATATCTATGTAGAGATTGGAATGGGGCAGATGGAGAGGTATGAAGAAGA
TTTTGAAAGCTTCATGCTTCAAGATACTTCTTCGTATTATTCTCGCAAGGCATCAAGCTGGATT
CAGGAAGATTCTTGCCCTGATTACATGTTGAAGGCATGACTCGTGATATCATTTTCTAAAATTT
GTTTTTATTTCACAATAGTTGAAATTATTTATTAACTTCTGTGCTTTCATGTTACAGTCTGAAG
AATGTCTAAAGAAGGAGAGGGAGAGAGTGGCTCACTACCTACACTCAAGCAGTGAGCCAAAGCT
GGTTGAGGTTGGTTATTATGCACTATGTAATTATGCCTGTACTTGTAGGTTTGATGAAGAAACC
ATAGATCTTGCATAAGCCTTGATTTTGAATTTTGTTATTTGTATTGAGATACTTTCCAGACTCT
TTTTAAATGCGTAGTCCAGGCATACTTGATTTTAAAGATTGATATCTGTTTGACTTGTATAGTA
ATCTTTTGTATGCAGAAAGTACAACATGAATTGCTGGTTGTGTTTGCAAGTCAGCTTCTAGAAA
AAGAACACTCAGGGTGCCGTGCATTGCTAAGAGATGACAAGGTAGAGCAAGTATTTTTGTTTTT
ATTGTTGAGTAGTTAGTGACTTAATTATTTCTTTAATGGTTATATTTGTCTACTTTCAGGTGGA
TGATCTCTCCAGGATGTACAGGCTTTACCATAAAATTTTGCGAGGCTTGGAACCTGTTGCAAAC
ATCTTTAAGCAGGTTTATTACCTATCTTCATTCTTTTGTTTATGATTAGCAAATGGATAGTCTT
TTCTTCATGGTCTACTTGCAGTCTCTTAATTACTGTATGACATTAACTGTAACTTGTTATTCGT
TCACAGCATGTCACAGCAGAGGGTAACGCTCTTGTCCAACAGGCCGAAGACACGGCTACTAATC
AGGTTCATATTATCTTACTTGTTATATTCGGATAACTCTTCTTTCTTCGTTTGTGATTGCTAAG
ATCGTTTTTATTCCACAGGTTGCAAATACTGCTAGCGTCCAGGAACAGGTAAAATTATAAACCG
ATTGTAGTAAAGATATATTGGAAATTAGAGATTCATTTTTTTTGGGGATAAAATTGCTAACGAT
TCACTGTCCTTTCATTATTTCCAGGTTCTTATCAGAAAAGTGATTGAACTTCATGATAAATACA
TGGTATATGTCACCGAGTGTTTCCAGAACCACACCCTCTTCCATAAGGTCTAATGTTCTTTCTG
CGCACTTGTCATTTGTCTATCTTATTCATGTTTATGTTGTGTTACTAACCTAAGTTTATGGAAA
CATATTTTAGGCTTTGAAAGAGGCATTTGAGATTTTTTGTAACAAAACGGTTGCTGGAAGTTCA
AGTGCAGAACTACTTGCAACATTTTGCGACAATATTCTCAAAAAGGGGGGAAGTGAAAAGCTGA
GTGATGAAGCTATCGAAGATACGCTTGAGAAGGTACTTTTGTCAAACTGTTTTTTCTTTTTCAA
GTCTCCAAAGAGTGGTCCTGAATTTTATAATGTTGTTACAGGTTGTCAAATTGCTTGCATACAT
AAGTGACAAGGATCTTTTCGCTGAGTTCTACAGGTTTATCTCCAACTTCAATCTTTCTTTATCT
GTGGATCGACTCTTTTTGCTTCTACTCTTTGTTTTTCTTGTAATGTTTTGTTTTTACTAGCTTT
TTGTGGAGATGCCTTGCAACAATATACAATTTGATTGACATAAGTTGGATTACTGAGTTGCAAG
CCATTTTGTTTATGGTTTTGATTGCAGGAAGAAGCTGGCCCGTAGGCTCTTATTTGATCGCAGT
GCTAATGATGATCATGAGAGAAGTATCCTGACAAAGCTCAAGCAACAATGTGGTGGACAGTTTA
CTTCTAAGATGGAGGGCATGGTTAGTTTGAGTGTCCCTGTGTTTCTTATTTTAAAGCGGTGCGT
GCTCTGATGACTTATGTTTTCTATATAATTTTAATCCGCTGGTGACAGGTGACGGATTTGACAC
TGGCAAGAGAAAACCAAAACAGTTTCGAGGATTATCTAGGCAGTAACCCTGCTGCAAACCCAGG
GATTGACTTGACCGTCACTGTTCTTACCACTGGTTTCTGGCCAAGTTACAAATCATTTGACATA
AATCTACCCAGTGAAATGGTAAAAACTCTATTGATTTTCTTACATACCTGAAAAGGAGATTGTT
TGCTTCTGATAGATCTAATTCGTTGATTCTTTGTTTCAGATCAAGTGTGTTGAAGTCTTCAAAG
GGTTTTATGAAACGAAAACGAAACACAGGAAGCTTACGTGGATCTATTCACTGGGAACTTGTCA
CATAAACGGGAAGTTTGATCAAAAGGCCATCGAGTTAATAGTGTCTACTTACCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.147760971
Functional Information
Coding potential Y
Potential coding position 1129842-1132673(+)
Potential amino acid sequence MLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVI
ALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSC
PDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVD
DLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIEL
HDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAI
EDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEG
MVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKG
FYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQVLPALREKHDEFMLRELFKRWSNHK
VMVRWLSRFFYYLDRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQID
RALLKNVLDIYVEIGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKK
ERERVAHYLHSSSEPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKIL
RGLEPVANIFKQHVTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQ
NHTLFHKALKEAFEIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAY
ISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQN
SFEDYLGSNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTW
IYSLGTCHINGKFDQKAIELIVSTYQVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYL
DRYFIARRSLPPLNEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVE
IGMGQMERYEEDFESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSS
EPKLVEKVQHELLVVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQH
VTAEGNALVQQAEDTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAF
EIFCNKTVAGSSSAELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRK
KLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAAN
PGIDLTVTVLTTGFWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKF
DQKAIELIVSTYQVLPALREKHDEFMLRELFKRWSNHKVMVRWLSRFFYYLDRYFIARRSLPPL
NEVGLTCFRDLVYNELHSKVKQAVIALVDKEREGEQIDRALLKNVLDIYVEIGMGQMERYEEDF
ESFMLQDTSSYYSRKASSWIQEDSCPDYMLKSEECLKKERERVAHYLHSSSEPKLVEKVQHELL
VVFASQLLEKEHSGCRALLRDDKVDDLSRMYRLYHKILRGLEPVANIFKQHVTAEGNALVQQAE
DTATNQVANTASVQEQVLIRKVIELHDKYMVYVTECFQNHTLFHKALKEAFEIFCNKTVAGSSS
AELLATFCDNILKKGGSEKLSDEAIEDTLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDRSAN
DDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQNSFEDYLGSNPAANPGIDLTVTVLTTG
FWPSYKSFDINLPSEMIKCVEVFKGFYETKTKHRKLTWIYSLGTCHINGKFDQKAIELIVSTYQ
(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017