Detail information of scaffold49.384_circ_g.1


General Information
CircRNA Name scaffold49.384_circ_g.1
ID in PlantcircBase ecr_circ_000646
Alias NA
Organism Echinochloa crus-galli
Position chrscaffold49: 3089845-3094509  JBrowse»
Reference genome Echinochloa crus-galli v2
Type   i-circRNA
Identification method circRNA_finder
Parent gene scaffold49.384
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTTTACATGTAGGATATCCATGGGCCAATTCTCGGTTGCCGGGCAGTGAAGTTCGTTGTA
ATCATTGTGTTTGTAGGATTGACATTTGCAAGCATCgcttgtgttagccacttctgcatctggt
gggtccgcagctccgtcaatagtaaatgacaacagtatgaaattattattccagattcagaaaa
aggtaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTGTGTTAGCCACTTCTGCATCTGGTGGGTCCGCAGCTCCGTCAATAGTAAATGACAACAGT
ATGAAATTATTATTCCAGATTCAGAAAAAGGTAAGAAATTCACATATAATGTGAATTTTGGGAC
TGCATCTGCCATATTGTTCTCATGTTTCTTCTAATTGTAAAGGTTGATGATCTACGTGCAAATT
ATTCTGGGTCAACAGTATCCCTTGCTGACATTTGCTTAAAGCCACTCGGTACAGACTGTGCTAC
TCAAAGTGTTTTGCAGGTGATGATTCTACTATGTCTACCTTATAATTTCTGTATTGAAACTGAC
TTGGTTTCTCAAAAATATACAAATGTTTTGTATTCCTTTGTGGTGTTTACAATGTTTTCTGCAA
AATGCTATAAAAGTGATAGTTTCAATGCTCAATGCTGCAGTATTTCCAGCTGGATCCTAAAAAG
TATGATGATGCATCGGGAATAGACCATGCTAAATTTTGTTTTCAGGTAAACTCTACTGTTGAAG
TATCTTATAAGTCCATGTTTTTCAGATGGTCTGTATAGCAACTTCACCAAAATTGGAGACTGGA
TTATGAATTTGATTGTTCTACTTATTGGAAAATGGATTCTATAATATATAGCAATGTTTTGCTT
GGTACTAAAGTTGTTGTATTATTGACAAAGGCACATGCGGTACATGGCATTGAATACTAATTAT
CAGGATACTTATTGGGTTTTTGAGCTGGTTGTAATGGTCATGCCTAAATACCTATCTTGTATAT
TGCAGCATTACACTTCTGAAGAGACATGCTTGAGCACTTTCCAGTCACCTATTGATCCTAGTAC
AATTTTAGGTGGTTTTCCAGGAAACAATTTTGCCGAGGTAACGTTTTATTATGCCTTTGTACTA
AAAGAAATACATTACATATTCTGATATCCCACTCCTTATCATCTTGCTGTTGCTGGGCAGGCTT
CTGCGTTTGTAATAACTTATCCTGTGAACAACAAGGTTGAGACAACTGGACAAGAGAACGGGAA
GGCCGTGGCTTGGGAAAGGGCATTTATTAATCTTGTCAAGGTTGGCTGTGATAATTCAATTTCT
CTTGTCGTTGCATGTGCTCAGCAAATGTCCCTTCTTTTGATAGAAGTCTACTAATTAATATCTA
TTCTATACAAGTACGCGAAAGGGCCTCTAGCTGAATTGGTTAGATGGTCTCAGTAGCACTTCTC
AGGTCCTGGGTTCGACTCTCCGTGGGAGCGAATTTCAGGCTGGGGTTAAAAAATCCCCTCGTTT
GTCACCACACCAAAGCATAGGTCAAGGCCCGGCCCAGGTCGTAGCCGTGGTTGGTTTGGGCGCT
CCTACCGGGGGTAGTTGCAGTAGCCGCCAGCCCGGTGGGTCATCTCACAAGGGTTACAGGCCCC
TGTGTAAGGGTGGGGCAAAGGTTCGGGGGTTTTCTCGACCTGCGTGAGAAGGTCTTCTTCTTAG
CAAAATGCCCGGGGGCTGTCTTACCCCCCGCAGGTCGAGTTTTTTTTTATTCTATACAAGTACT
TCCACATTTATCCTTTTAGCAGTTCCTGTGGCACATTTCAGCACTTTCTCACTCCCTCTGGGTA
AAGAATGAATCTTCTTTGTGCGCAAGTAAACTATTATTCCTTTCAAGCAACCGTAAAGAACATT
TGAGGACGCATGGTCACATGGTTCTACGTCCTCATAAGATACAGCAATGTGAAAGAACTTGGAT
AAGGCGATCTAAGAGTATTCAACTTGTCTTGAGGCATTATTTGGGAACACAACAAAATTGTCAG
TTGTTCATGATGTAGCTAGCCAAAGCCAGTTCATATATTCCATCTCCCATTGGTTGAAGCTTGT
AAAATTTGTGTGGGGGCATTTGAGGATCTGCCACCCCTCAAAGTTAAGTTAGGATAATTCATTC
CTTGCCTTGCATGTATGTGGGTCCTGGTGCATGTGTCATTGAGATCAGATATCGGTCGGCACGT
CCTGAAATTCAACTTATGTTCAGCTTTTTTTTATTTTAAGTTACTTATTCTTCACTTTCTTATA
TTTTGCTTTCAATATTACGTACGGTGAGCTAGAAAACCTTTTTTTTTCAGGAGGAAATAGTTCC
AATGGTATTAGCTCAGAACCTGACATTGTCATTTTCATCCGAGAGCTCTATCCAAGATGAATTG
AACAGAGAGAGTACAGCCGATGCAATTACCATAGTGGTAAGTATCTTATTTATTTAGAACTCTT
TGATATTCTTGAAGAAAGTACAGTTTGAACTGTATGCTTATTTCTTTCTTTGATTGAAATCAGA
TTAGTTATATCGTGATGTTTGCATATATATCATTCACACTTGGAGACCGTCCTTCTCGTTGGCT
GTCACTATTTATTTCATCAAAGGTACGAGTACAATAAAAATGATTGCTCAGCTCTTCGCGATGC
TTAGATGTCATTTTCCTTCCTCATGCTTCTTGAAAGAGAAATATAGAACTGTACAAGATGGAGA
TCTATTCTCATTTGCATGCACCATTGAACTCGCAGCTGGTATCTAATATATGCTTATGTTTCAT
TTATGTACCTGATAAATGAAGCGACCACTCTACCTTAATGAAATGACACGCAGTTCTCCTGTGT
GGTTCGAGAAAAAAAATGAAGCGACCACATTTTATGTGGTTCTATGCTCTAGCTAAAATTGTTT
TATAAGTGAAAATTATCATATGTTACTGACTCGAGACAACTCTGCTTAGATTCATTAGACTGTT
TTGTAAATTTACAGAATTATGACTCATTTTTCAAACAACTGATTTTTATTAACTCAAGCAATAA
ATGGCCCCTTCACAATTCTGTAAAATTGCACGGAAAATACAACTAAAACTTTCTGACAAGAGGC
AATTCCTCATGTAATAGTTTAGTCTCGGGTTTCATTTTGGAGAGCCAAATTATTTTTCTGATAC
TATTTTACTTAACCATGCAAAACATGCCTTGCCCTTGGTGCATTTGGTCTTGACAAGCATTTGA
CAAAATAAACTTCAGGTACTGCTTGGCTTGTCTGGGGTTGTCCTGGTGATGCTTTCTGTTTTAG
GATCAATGGGATTCTTTAGTGCTATTGGTGTGAAGTCCACCCTTATTATCATGGAAGTGATTCC
TTTTCTTGTGCTGGCTGTAAGTCTTCTGTACAATAGTGATTGACTTTCTGTTCTTCAATTAATA
TGATATTCTTTCTGGGTGTGAGTCTTCTGTACAATAGGACCGAATTTTTGTTCTTCAATTAATA
TTGTGTTCTTTCTGGCTATAAGTCTTCTGTAAAATAGAGATTGACTCTGTTCTTCAATTAATAT
GATGTTCTTTTCTTATATTTCTTTGATTTTCTGTTAATAAAAAACTATTTGCACTTACACACCT
CAGTTACACTAGCATTTTCATGTCCAATATTTTACTGTTGCTTTGTTTACCATGAGCTACCTCT
GCTTAGAATTGGATTCCAATGAACTATGTAAGATATTGGTTGATGTTGTATGCATCTGCTGAAG
GAACATGCTTCTTAAGAAAATTTTTCGAGTCAGAACAATGTTTGTGTCTAATTTACCTTTTATA
TCTCTAGTTGTTCCAACTGTTTCTCTTTGGCCAAGATCGTTATCCTTTTAATCCTTCCGTTGCT
CATGTCATATTAGCCTCGTACTATTATTCATATTGATGTCGTGACTACAATATGCCTATTTTCC
TGAAAGGGGGTTTGGTACTTGACTGATTCATTTAATTGGTTTCTAATTTGTTCAAGAAGTAGGT
GATCATGTGACAAGTAGATAGAAAGATTTATAAAGTTTGCAGGATGGATAATAGGAAGATGCTA
TTTTCAATTACTATGAAGAAACTGACAGTTGTGCTTGTGGTTAGGTCGGTGTCGATAACATGTG
TATCCTTGTGCATGCTGTCAAACGCCAACCGGACCAGTCAAACTTGGAAAAGCGTATAAGTGAT
GCACTGGTGGAAGTTGGACCATCCATTACATTAGCCAGTTTTGCTGAAGTACTAGCTTTTGCTG
TGAGTGCAATCAATCCAATGCCTGCGACCAGAGTGTTCTCCATGTTTGCTGGTTGGTTTATCTA
CATTGGCTGGATTGCATCCCTACTTGTAACTCTTGGGAGTTTCCAACCTACTTTGGTTTTGTGC
AGCACTGGCAGTCTTTATGGATTTCCTTCTCCAAGTGACAGCCTTTGTAGCCCTTATTGTATTT
GACTTTAGGAGGGCACAGGATGGCAGGATTGATTGTGTCCCTTGTGCGAGAATCACATCAAGTC
CAGCTGCTGGTGATGGTAAGTAGTGAGCTAGGATATTGCATTTGCTTTGCTAGAACCTGCTGTA
TTAAATGTGAAGTCATTTTGGCTCTTCTAACGGCCCTCTTTTCTTACTGCCTCGCATACTTAAG
GTGGTGATGGGCAGAGGCTCCACTTGCTTGCTAGATACATGAGGGTAAACATTTAAGTTACTTT
TTGGTGTTGTTCATACTTTCAATTTTAAGCCATGTTTTAAGTTGTGAGATTTTCCTGTTCTTTT
GACAGAATTACAATTACCTTTTCTTTTTTACATGTAGGATATCCATGGGCCAATTCTCGGTTGC
CGGGCAGTGAAGTTCGTTGTAATCATTGTGTTTGTAGGATTGACATTTGCAAGCATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References NA