Detail information of BGIOSGA028879_circ_g.1


General Information
CircRNA Name BGIOSGA028879_circ_g.1
ID in PlantcircBase osi_circ_007818
Alias 8:25671774|25674710
Organism Oryza sativa ssp. indica
Position chr8: 25671774-25674710  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA028879
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA028879_circ_g.2 BGIOSGA028879_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA028879-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGGCAAAAGATGGATCCTTCATGGAAGAACCTGGGTCTGGTGCTGTGGCGACCATTGGCGAGAA
ACAGGTTTCAGTTGGAACACTTGATTGGATCAGGAGgatcgtgttccagcagacggtgttgtca
aatctggacggagtacagttgatgaatcaagtttgacaggtgaacctatgcctgtaacaaagat
agcagggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCGTGTTCCAGCAGACGGTGTTGTCAAATCTGGACGGAGTACAGTTGATGAATCAAGTTTGA
CAGGTGAACCTATGCCTGTAACAAAGATAGCAGGGGTCAGTTTCTGTGACCACGTTATAATTCC
TTAATGTGGATATATCAGCCACATCTAGCTAAGCATTAGTATCTATCGTGTGCGCTGCATAATA
ATGTTTCCTTGCTTCCTCTTTTTTAGACAGAAGTATCAGCAGGAAGCATTAACTTAAATGGTAA
AATCACTGTTGAAGTTAGAAGACCTGGTGGTGAGACTGCCATGTCTGACATACTCCGTTTAGTG
GAAGAAGCACAGACGAGGGAGGCCCCAGTTCAACGATTAGCTGACAAGGTATTGCCATCTTTGC
ATGTGGAAGTTGAGAGTGGCTCTAGCAAAACTAGTAACTTAGAGTTAGTGTCTTATTTAATTCT
GAATTATGCTTCTACTGTGCTATCTATCACAATTCTGCACACATTCGTAAAACCATGGAGATAA
CTCCATGTAGATAATGTCCATTAACTTTCCACATGGATCCTCTTTGCGAAGTGGATAATAATTA
TGGAATATGGGCCATCAACTCCACATTTTTTTTATTTTTAATAGGTAAGATCCAAATAACCAGC
TTTTAGTTATTTTAAGTGTATTAGTTAAGTAGGCTATGATCCTTTTTTCACTTACTACTTAGGA
TGCACGTTCAAATTATGACTTGGTTCAGACATTCAGTGCGATACCCAATGCATCAAGTTCTTGA
TCAATGAAGATATGGATTGATTCCATTATCTATTAGCTTATTAGTGTCTGTTATTTCTTGTGAG
ATTTATGTTCTCCTGTACTGTATCCTGAGAATCCATTGTGGACCAATAATGATATTTTTTTGGT
GTTTTCCAGTGGATAGGTTTATGATTATCAGAGTTCAGTGCACCATATGATGCATCAGATACTC
TTATGTTTTTTTTTCAAACACGCAGGAGAGCTGTGTGCCATTCCATTAAGAAGAATAATTACAA
AGGGGAGATTAGGGGTTAAAACCCCTTTTCGACCCCCAAACACACCTCACGCACACATCTTGGG
GAACTAAAAACAAATGCACCACAAATAAAAAGACCACCAACAATCATTCCACACAGATTAACCA
TCCAGGGATCAACCTAGGAAACAACTCACGGAGTGCTGTGCTGCCGGCGAGGCACCAAAGAGCA
CTCTCGTTAGCAAAACCATGTAGCATAACAGGGACACTTGGTTGTGCAAGACATATTTAATCAT
AACCTTTTTTTTTGTTTGCTCACCACAGGTTGCTGGGAACTTTACATATGGAGTTATGGCTCTT
TCTGCTGCTACTTATACATTCTGGAGTATTTTTGGTTCACAACTTGTACCTGCTGCTATCCAGC
ATGGAAGTGCAATGGCTTTGGCATTGCAACTTTCTTGTAGCGTTCTGGTATGATACGAGGAACA
AATGATTATCACTTCAACTCGGACAATTTCATATGAATGAAGGCTAAAGATTTTTCTAAAGCTA
GTATATGGATAAATTCAAATAGTATTGTCAAAACGAGGTTGTATTGAAGAAAAAAACAATCTGT
AGTGCCAAATGCAGCTATTTTGTGTGAATTTTTATACTTTGCATGACGAAAGGTTGTTTTATAC
AGTAGGTATTATTTGTGATTCTTTTAAGGATTCAGTATTAAGTTTCTTGTAAATCAAAATAAGA
TCAAGGGTAGAGTTGGATGAATCATGCCTTTGTTTTCATTAGCATCGAGAAATTCTAGTAGAAT
AGATGGGTATCAGGATAGGAACAGCTGTTAGAAGGCCCAACAAATATACTTCTGTTTTGAATGT
TAAATTATAATTTTCATTTATGTTATCTGATTATCCTTTGTTTTTAAGGTGCCATAATTTTCAC
TTAAGAGAAAAATTGTTTCATGTATAATTTTGTAAGCATGAACCCTACCTCAAAATTGCTACTA
ATTTGATTTTCATTTGCAGGTAATTGCTTGCCCATGTGCCCTTGGGCTCGCCACACCCACTGCT
GTGCTGGTATGCAACAAGATATGACCTTTTGCCTGAGTAAATAGTCCATCCATAATTATTTGGA
TATATGTTTCCAGGTCGGGACTTCATTAGGTGCAACAAGAGGACTCCTTTTGCGTGGTGGGGAT
ATTTTAGAGAAATTCTCAGAAGTTGATGCCATTGTGTTTGACAAGACTGGAACTTTAACAATTG
GGAAACCTGTAGTGACTAAAGTAATAGCTTCTCACAGAGAGGGAGATGAAAATACAAAGTTAAG
TGTTCTTATGTACTTTAATTTATGTATTGTGTTCAATGCTTCAATCACTTGAATAAAGTTTTAA
AGTTTCAGTAGGTTTTAAATTTTTTGTTTCCCATTTGATTAAAATTCTCTGCAAAGCATACCAG
TGATTCTGGTAGTGAGATTTATTTATGAGATATTTCTGTTGATAAAACATTTTTCGTTCATCAG
GGATTCCTGTAACAATGAATGGACTGGTGAGATTCTGAGTTTGGCAGCAGGTGTAGAATCAAAT
ACAACCCACCCGCTTGGAAAAGCCATCATGGAAGCTGCTCAGGCTGCCAATTGCCTCTATCTGC
AGGTAGTCGCAGCAAAAGTATACTATATACCTGAGCTAAAATGATCTGAAACATGAATTACAAA
AGTTCGTCTAGTTAAAATTTGCGTACCTTCTGTTTTTATGAAATGGGTTCGTCTAATTAGTATT
TCTGTTGCACAACACTACTATTTCCCATCGAAGTTTCAAATTTTACTGTTCTATGTGTTCATTC
TTTGCCAATCTATGCATTTACAGGCAAAAGATGGATCCTTCATGGAAGAACCTGGGTCTGGTGC
TGTGGCGACCATTGGCGAGAAACAGGTTTCAGTTGGAACACTTGATTGGATCAGGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 25672082-25674706(-)
25671850-25671834(+)
25674621-25671820(+)
Potential amino acid sequence MSDMAVSPPGLLTSTVILPFKLMLPADTSVPAIFVTGIGSPVKLDSSTVLRPDLTTPSAGTRSS
*(-)
MPVTKIAGTEVSAGSINLNGKITVEVRRPGGETAMSDILRLVEEAQTREAPVQRLADKVAGNFT
YGVMALSAATYTFWSIFGSQLVPAAIQHGSAMALALQLSCSVLVIACPCALGLATPTAVLVGTS
LGATRGLLLRGGDILEKFSEVDAIVFDKTGTLTIGKPVVTKVIASHREGDENTKDSCNNEWTGE
ILSLAAGVESNTTHPLGKAIMEAAQAANCLYLQAKDGSFMEEPGSGAVATIGEKQVSVGTLDWI
RRIVFQQTVLSNLDGVQLMNQV*(+)
MDPSWKNLGLVLWRPLARNRFQLEHLIGSGGSCSSRRCCQIWTEYS*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021