Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G02180_circ_g.1 |
ID in PlantcircBase | ath_circ_035973 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr5: 432700-433073 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | AT5G02180 |
Parent gene annotation |
Amino acid transporter AVT1D |
Parent gene strand | + |
Alternative splicing | AT5G02180_circ_g.2 AT5G02180_circ_g.3 |
Support reads | 4 |
Tissues | seed |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT5G02180.1:2 AT5G02180.2:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.190437968 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |