Plant Circular RNA Database

Detail information of Os05g0529700_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os05g0529700_circ_g.2
					
						ID in PlantcircBase
						osa_circ_028616
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr5: 26311919-26313298  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os05g0529700						
					
						Parent gene annotation
						
							Similar to electron transporter/ heat shock protein binding prot
ein. (Os05t0529700-01);Similar to electron transporter/ heat sho
ck protein binding protein. (Os05t0529700-02);Heat shock protein
 DnaJ family protein. (Os05t0529700-03)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						1
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os05t0529700-02:6
Os05t0529700-03:6
Os05t0529700-01:6

General Information
CircRNA Name	Os05g0529700_circ_g.2
ID in PlantcircBase	osa_circ_028616
Alias	NA
Organism	Oryza sativa
Position	chr5: 26311919-26313298 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os05g0529700
Parent gene annotation	Similar to electron transporter/ heat shock protein binding prot ein. (Os05t0529700-01);Similar to electron transporter/ heat sho ck protein binding protein. (Os05t0529700-02);Heat shock protein DnaJ family protein. (Os05t0529700-03)
Parent gene strand	-
Alternative splicing	NA
Support reads	1
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os05t0529700-02:6 Os05t0529700-03:6 Os05t0529700-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GATCCTTGGGTGCACTGTCATCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTC
ATCATACACTGCACGCTGCACCGGATCACTCAGCACcatttccttggtatcgagttggggatcc
ccagatatcagtccaagaactacttatatctgaatactttttgtttgtcatccgtgtcctaatt
ttttcctg

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 520
Transcript exons: 26311919-26312015,26312166-26312204,26312417-26312467,26
312767-26312848,26312951-26313071,26313169-26313298
CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA
CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCAAAACTTTTGACTGTCTCTTTTCCCAACGC
ACGCTAGCCAATCGGAATACATCAACTGAAACTCCCATCCCAGCACTCATCAGCCCAACATTCA
CCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTGTGCAGCAGAAGTCCAGTGAAT
ACAGTTGACTGGGCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATTGGGAATAT
ACTCTTGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGCACAATATT
TGCATCCTATGCAGGTAAACTCATCAACGAACACCTGATCCTTGGGTGCACTGTCATCGAAGAA
AGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTCATCATACACTGCACGCTGCACCGGATCA
CTCAGCAC
Transcript length: 528
Transcript exons: 26311919-26312015,26312166-26312204,26312409-26312467,26
312767-26312848,26312951-26313071,26313169-26313298
CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA
CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCAAAACTTTTGACTGTCTCTTTTCCCAACGC
ACGCTAGCAAATTTACCAATCGGAATACATCAACTGAAACTCCCATCCCAGCACTCATCAGCCC
AACATTCACCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTGTGCAGCAGAAGTC
CAGTGAATACAGTTGACTGGGCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATT
GGGAATATACTCTTGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGC
ACAATATTTGCATCCTATGCAGGTAAACTCATCAACGAACACCTGATCCTTGGGTGCACTGTCA
TCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTCATCATACACTGCACGCTGCA
CCGGATCACTCAGCAC
						
					

						Genomic sequence
						
							CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA
CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCTGTAACAAAATAAAGGTTTACATAAAATGT
TTAGTTTACAAAACAATGACCCATTTGCAAAGATACAAATAGGTAAATGATAACGAAATCCTTA
AAAACATCTAACTCTATGAGAAACACAAAGATGACGAAGGGGGAAGGAACCATACCAAAACTTT
TGACTGTCTCTTTTCCCAACGCACGCTAGCCTGTTAAATAGAAAATATCTTAAGAACAAGTAAA
ATTAACAACATAGAGAAGTATTATGCATAATATAATCTGTATGCTTAAACAAAAGTATGCTTTA
TCTATACTCTATTAGCCTTAACATAGACATGGAAGAAAGAATCTTGAGGATATGCAAACAGAGA
AATTTAGATAGTACATGCCAAATTTACATAATAAAGACATACAAATTTACCAATCGGAATACAT
CAACTGAAACTCCCATCCCAGCACTCATCAGCCCAACCTGTTCAAAATTGAAATTCCCTTTAGT
GTACTACTAGGCTATTAGGAGAAAACAAGATAATATCACCTGTAAAATATCACTTGAGTTCCAG
AAAAATGCTAACAGAAAGAAAGGAACAGGGATATAAGAAACTTTCTTGTGCACCGTTTATTTTA
ACTAGGAGTTTTTGTGATTACATCTATGTTATAGAAGTTAACCATAAGGTCCTAAACTCCTAAT
AATCAAACCAAAGAACTGGAGATTTATATGACCACAAAAATATACCGTACATCTAAATAACTGA
AAGAAGGATTACTTACATTCACCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTG
TGCAGCAGAAGTCCAGTGAATACAGTTGACTGGGCTGGACATGGAAATATAACACACATGAATA
ACACATTCAGTAATCTGTTATGAACAGATAAACAGTCCTAGTATTATGCTGGGTTGGGTTTCAG
AGCATCACCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATTGGGAATATACTCT
TGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGCACAATATTTGCAT
CCTAAATCCACATCAACAAGGTGAAATATATCAAATCTCTTTATGAAGAACCAAATAGCATCTT
TTATAGCTCTATTCATACCAAAAAATGTCAGTACCTATGCAGGTAAACTCATCAACGAACACCT
GATCCTTGGGTGCACTGTCATCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTC
ATCATACACTGCACGCTGCACCGGATCACTCAGCAC
						
					

			
		

Sequences
Splice junction sequence	GATCCTTGGGTGCACTGTCATCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTC ATCATACACTGCACGCTGCACCGGATCACTCAGCACcatttccttggtatcgagttggggatcc ccagatatcagtccaagaactacttatatctgaatactttttgtttgtcatccgtgtcctaatt ttttcctg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 520 Transcript exons: 26311919-26312015,26312166-26312204,26312417-26312467,26 312767-26312848,26312951-26313071,26313169-26313298 CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCAAAACTTTTGACTGTCTCTTTTCCCAACGC ACGCTAGCCAATCGGAATACATCAACTGAAACTCCCATCCCAGCACTCATCAGCCCAACATTCA CCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTGTGCAGCAGAAGTCCAGTGAAT ACAGTTGACTGGGCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATTGGGAATAT ACTCTTGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGCACAATATT TGCATCCTATGCAGGTAAACTCATCAACGAACACCTGATCCTTGGGTGCACTGTCATCGAAGAA AGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTCATCATACACTGCACGCTGCACCGGATCA CTCAGCAC Transcript length: 528 Transcript exons: 26311919-26312015,26312166-26312204,26312409-26312467,26 312767-26312848,26312951-26313071,26313169-26313298 CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCAAAACTTTTGACTGTCTCTTTTCCCAACGC ACGCTAGCAAATTTACCAATCGGAATACATCAACTGAAACTCCCATCCCAGCACTCATCAGCCC AACATTCACCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTGTGCAGCAGAAGTC CAGTGAATACAGTTGACTGGGCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATT GGGAATATACTCTTGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGC ACAATATTTGCATCCTATGCAGGTAAACTCATCAACGAACACCTGATCCTTGGGTGCACTGTCA TCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTCATCATACACTGCACGCTGCA CCGGATCACTCAGCAC
Genomic sequence	CATTTCCTTGGTATCGAGTTGGGGATCCCCAGATATCAGTCCAAGAACTACTTATATCTGAATA CTTTTTGTTTGTCATCCGTGTCCTAATTTTTTCCTGTAACAAAATAAAGGTTTACATAAAATGT TTAGTTTACAAAACAATGACCCATTTGCAAAGATACAAATAGGTAAATGATAACGAAATCCTTA AAAACATCTAACTCTATGAGAAACACAAAGATGACGAAGGGGGAAGGAACCATACCAAAACTTT TGACTGTCTCTTTTCCCAACGCACGCTAGCCTGTTAAATAGAAAATATCTTAAGAACAAGTAAA ATTAACAACATAGAGAAGTATTATGCATAATATAATCTGTATGCTTAAACAAAAGTATGCTTTA TCTATACTCTATTAGCCTTAACATAGACATGGAAGAAAGAATCTTGAGGATATGCAAACAGAGA AATTTAGATAGTACATGCCAAATTTACATAATAAAGACATACAAATTTACCAATCGGAATACAT CAACTGAAACTCCCATCCCAGCACTCATCAGCCCAACCTGTTCAAAATTGAAATTCCCTTTAGT GTACTACTAGGCTATTAGGAGAAAACAAGATAATATCACCTGTAAAATATCACTTGAGTTCCAG AAAAATGCTAACAGAAAGAAAGGAACAGGGATATAAGAAACTTTCTTGTGCACCGTTTATTTTA ACTAGGAGTTTTTGTGATTACATCTATGTTATAGAAGTTAACCATAAGGTCCTAAACTCCTAAT AATCAAACCAAAGAACTGGAGATTTATATGACCACAAAAATATACCGTACATCTAAATAACTGA AAGAAGGATTACTTACATTCACCCGCTCTATTCTCCGCATTTCATTCTCAAGGAGAGAAAGCTG TGCAGCAGAAGTCCAGTGAATACAGTTGACTGGGCTGGACATGGAAATATAACACACATGAATA ACACATTCAGTAATCTGTTATGAACAGATAAACAGTCCTAGTATTATGCTGGGTTGGGTTTCAG AGCATCACCAACTATCAATGGCCTCCTGAATTAGCTCTGTGCTACCCGATTGGGAATATACTCT TGACCTCCCATAATCCTCCTCGATTCTAAATACATTGGGGCACACATTGGCACAATATTTGCAT CCTAAATCCACATCAACAAGGTGAAATATATCAAATCTCTTTATGAAGAACCAAATAGCATCTT TTATAGCTCTATTCATACCAAAAAATGTCAGTACCTATGCAGGTAAACTCATCAACGAACACCT GATCCTTGGGTGCACTGTCATCGAAGAAAGGGTTGGTCGCGGTTGCTGTATACCCATGGATTTC ATCATACACTGCACGCTGCACCGGATCACTCAGCAC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.23326837

Conservation Information
Conserved circRNAs	NA
PMCS	0.23326837

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							26313255-26312005(+)
26312792-26313290(-)
26311923-26313290(-)
						
						Potential amino acid sequence
						
							MDFIIHCTLHRITQHHFLGIELGIPRYQSKNYLYLNTFCLSSVS*(+)
MRRIERVNVGLMSAGMGVSVDVFRLASVRWEKRQSKVLEKIRTRMTNKKYSDISSSWTDIWGSP
TRYQGNGAE*(-)
MVLSDPVQRAVYDEIHGYTATATNPFFDDSAPKDQVFVDEFTCIGCKYCANVCPNVFRIEEDYG
RSRVYSQSGSTELIQEAIDSCPVNCIHWTSAAQLSLLENEMRRIERVNVGLMSAGMGVSVDVFR
LASVRWEKRQSKVLEKIRTRMTNKKYSDISSSWTDIWGSPTRYQGNGAE*(-)
						
						Sponge-miRNAs
						
							osa-miR319a-3p.2-3p 						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	26313255-26312005(+) 26312792-26313290(-) 26311923-26313290(-)
Potential amino acid sequence	MDFIIHCTLHRITQHHFLGIELGIPRYQSKNYLYLNTFCLSSVS(+) MRRIERVNVGLMSAGMGVSVDVFRLASVRWEKRQSKVLEKIRTRMTNKKYSDISSSWTDIWGSP TRYQGNGAE(-) MVLSDPVQRAVYDEIHGYTATATNPFFDDSAPKDQVFVDEFTCIGCKYCANVCPNVFRIEEDYG RSRVYSQSGSTELIQEAIDSCPVNCIHWTSAAQLSLLENEMRRIERVNVGLMSAGMGVSVDVFR LASVRWEKRQSKVLEKIRTRMTNKKYSDISSSWTDIWGSPTRYQGNGAE*(-)
Sponge-miRNAs	osa-miR319a-3p.2-3p
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os05g0529700_circ_g.2

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