Plant Circular RNA Database

Detail information of GLYMA_08G111000_circ_g.3

			
						 General Information
					
						CircRNA Name
						GLYMA_08G111000_circ_g.3
					
						ID in PlantcircBase
						gma_circ_001980
					
						Alias
						Gm08circRNA220, gma-circRNA1215, circRNA197
					
						Organism
						
							Glycine max						
					
						Position
						
							chr8: 8532014-8535752  JBrowse»						
					
						Reference genome
						
							v2.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						Tophat, CIRI, find_circ, CIRI, CIRCexplorer
					
						Parent gene
						
							GLYMA_08G111000						
					
						Parent gene annotation
						
							hypothetical protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							GLYMA_08G111000_circ_g.2 GLYMA_08G111000_circ_g.4 GLYMA_08G111000_circ_g.5 GLYMA_08G111000_circ_g.6 						
					
						Support reads
						NA
					
						Tissues
						leaf, root, stem, flower bud, pod
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						KRH42785:5
KRH42784:5

General Information
CircRNA Name	GLYMA_08G111000_circ_g.3
ID in PlantcircBase	gma_circ_001980
Alias	Gm08circRNA220, gma-circRNA1215, circRNA197
Organism	Glycine max
Position	chr8: 8532014-8535752 JBrowse»
Reference genome	v2.0.38
Type	e-circRNA
Identification method	Tophat, CIRI, find_circ, CIRI, CIRCexplorer
Parent gene	GLYMA_08G111000
Parent gene annotation	hypothetical protein
Parent gene strand	+
Alternative splicing	GLYMA_08G111000_circ_g.2 GLYMA_08G111000_circ_g.4 GLYMA_08G111000_circ_g.5 GLYMA_08G111000_circ_g.6
Support reads	NA
Tissues	leaf, root, stem, flower bud, pod
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	KRH42785:5 KRH42784:5

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CACTCAATATATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTTAC
AAAGGATCAATCTGATTACCTTTGGTATTCAACCAGgtatacacaatggggtgaaagattgcct
catagacctgttgaagaccttgcttttgcagttgcacgttttttccaacgtggaggaagctttc
aaaactat

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 753
Transcript exons: 8532014-8532119,8533114-8533201,8533313-8533434,8534950-
8535153,8535520-8535752
GTATACACAATGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCTTTTGCAGTTGCA
CGTTTTTTCCAACGTGGAGGAAGCTTTCAAAACTATTACATGTATTTTGGCGGAACAAATTTTG
GCCGCACTGCAGGGGGACCCTTGCAAATTACAAGTTATGATTATGATGCTCCAATTGATGAGTA
TGGTCTGCTGCGTGAACCAAAATGGGGTCACTTGAAAGATTTACATGCTGCTTTGAAGCTTTGT
GAGCCTGCCCTGGTGGCCACTGATTCACCAACATATATAAAATTGGGTCCAAAGCAGGAGGCAC
ATGTGTACCAAGCAAATGTTCACCTTGAAGGGTTAAACTTGTCTATGTTTGAATCTTCAAGCAT
ATGCTCAGCATTTCTTGCCAACATTGATGAATGGAAAGAGGCAACTGTGACCTTTCGCGGTCAA
AGATACACTATACCACCATGGTCTGTGAGTGTTTTGCCAGATTGCAGAAATACAGTTTTCAATA
CTGCCAAGGTTAGAGCACAAACTTCTGTCAAACTGGTAGAGTCTTATTTGCCAACTGTCTCTAA
TATTTTCCCAGCCCAGCAATTGAGGCACCAGAATGACTTTTACTACATCTCAAAGTCTTGGATG
ACTACAAAAGAGCCACTCAATATATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGC
ACTTAAATGTTACAAAGGATCAATCTGATTACCTTTGGTATTCAACCAG
						
					

						Genomic sequence
						
							GTATACACAATGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCTTTTGCAGTTGCA
CGTTTTTTCCAACGTGGAGGAAGCTTTCAAAACTATTACATGGTATGATAGTTGAAGTTTTTTT
TTATTTGTATTTTTGGCCTAACAGTTCACTTTTGGCTTCTTTGCTATTCTAAGCTAATGGTTAT
CTCATGGAGGATTCTTGTCCAATGTCTGTATTGGATGGCTTTATTATACTGCTGTACTTTTGCC
ATATTTTGTTCTGTATTGCCATGCTTTTGTTTTACTATTTCCCTGTCTTTTATTAATAAAATTG
CTTTTTATTTTAAATATCCAATTGAAACTCTACTGTAAGATGTGAATGGCCATTACCGGTTTAG
AAGCATAAAAGATCTCTGTCTTGATACTGAAAATGCAGAATAAAAGCATATTAAAAATTGAACA
GGAAAAATTTGGATAGGTAGAAACAAATATAGGATTCAATGGAGGGATGCCTTTGAGAGGTAAT
ATACAACAGCTGAGTAAATACATCCTCACAGGATGGGAAAATGGAAGTAGTTTGATCTATGCCT
TTATTAGCAATTGTTTAGAATCATTTTCTATACTGCCTTAGGTAGCCATCAATAGATGTGGAAC
TTGTATAGGGGACTGCTGAAAAAATAGAAAAATTATACAGTGAGGGAAGGCCTCTTGAAAAGAT
GAACCCCTTATGTAATGTTCCTCTCAAAATCTAATTCAAGAACCATTGCCCAGTTTTAAAGTGA
CTGGGAAAGTGAAGGAATATATATTAATAAACATTACTAAGGTCTTTATGCCATTGATGCTTTA
AATGTCTTATTTTGCTTTTTCATTCTATAGGATGCCTTGTCCTTTGTTTTGTACTTCCATTTAT
TTGTTTCTGGTAATTTATTTTCAATGAAAAATAAACTTAAAAGTCAGTGAGGTGATATCTTCTA
ATTGCCACTTTTCTTTATATATTTTAGAATTATTTAGGATGAATATATATGTATTATACAAGGT
TTTATCTATATCTGATGTATATTTTAGTCTTTGAGTATCTGTAACCCAGATCTTGACAAGCCCT
TTTATGTTACAGTATTTTGGCGGAACAAATTTTGGCCGCACTGCAGGGGGACCCTTGCAAATTA
CAAGTTATGATTATGATGCTCCAATTGATGAGTATGGTATGTAGAAGAATAACAATAAGACTGT
TGTTTAGATGGTAGCTAATGGGATTCATATAGGCTATAGCAGTTGACATGATTGATGACACTCG
ATGAACCTTGTTTTTCTAGGTCTGCTGCGTGAACCAAAATGGGGTCACTTGAAAGATTTACATG
CTGCTTTGAAGCTTTGTGAGCCTGCCCTGGTGGCCACTGATTCACCAACATATATAAAATTGGG
TCCAAAGCAGGAGGTATGAGCCTAGGCTGAAATAGATATTTCATAAAAATTTCAAGCATTATGG
CTTATTACATTTAATATTTTATTGGTAGTTACAGTCAGAGACCTACTCTCCTAAAGCTTAAGCT
ATTAGGTAATATGTCACCAATGGCTTATATCTCTACTACTAAGTCTTTTGATGCAAGTACCTTT
GGGTTTGAAGTGTATACAATGCATAGGCCACTTTACCTTCTGCTAAAATTCAACTTATAAGAGT
CTCAAAGATAGAAGTCCTGATCATCTGGTCATACAGTCTCTCATTCTCATAGCATATTATGAAT
CAACTCTCCTAAAAGCTTAAATTATTAGGAGAAGGCGCATGGATTTTTTTACATCTCAGCAGTC
ACCTTGATTTTCTGATCTCTGCGCTTCTTTCTATAAAATTGTCGGTTCCTGTTTTCTGATCTTA
TCCAAATGGCCATGGCTTGGGGTTCAATCCTTGAAGGGTCATTTGAGGTGCCCTCCAAACCTGA
AATAACAATTCAACCATCTGTGGTTCATACCTGACACTCATTCTCTCCAAATAACTGCAACAGA
AAAACCCAAAAGTCCAATTTCCCCACCTCAACCCAAAGCATTTTCTCCAAAATCATAAGCTTTC
TCAAATCTAACTTAAAAACCCAGCTTCGTTTCCTCTGGACTCTAGCATCATCTAGTACCCTTTT
AGCAATGAAAGCATTACCAATAATTTTTCTACTAGTAATAAAAGATAAAATGATTCTCAGAAAT
GGCGTCTGAAAGGGCTTCATTCAATCTGGAAGCAAGTACTCTTGTGTGAGTTGTATCTATCCTA
TAAACACTAGAAACCGAGTTAATGTTGAAAAAAATCCTTAACTTTGACTGACCTATCCTTTTTA
TTTGGGTTCATACAAATTCCTTCTATTGGGGTTCTGAGAGATTTTGGGGTTATGCTGGACCAAA
AGGCAAAACCCAAAGACTGTGAGCAGAAGCAGGATTGTAATCTGTTAAATCCTTTATTGATTTT
CAGTTTTGCACTCAGCTAGCTCATATTTATATACATAAAATAATGAATGCATCTTATATTTACA
ATTCAAGAACTATAATTAGGAATAGAACTGTTCCCTATGATCCTAGTGATCCCAACAATATCCT
ACTCCTATTATTTCCAAACTTATTACTGTTATCATTCCTCTTAGAATGTGGGTTTGACCCTAAC
TCAACCCCAAAAGCTAATTCATAGGATGAGGGCTTCCCCCCACTTATACACTCTATATTGGCCT
TATCTCTAGCCAATGTGGGACTTGGATTTCTCCAAATAATTCCAAACATTTACATGCAATCTTC
TTGTGGTGAAATAGATATTATATATTTTACCTTGTGAGAATAGTTGTGTATATTTATCTACTTT
GATTAATACATTATGTCTTCACAAGAACATGTAGCCAATCCTACTTTGTGGGATAGGTATGGAA
AAATATATGGGTGACTTTTTATTTTTTTCTGAATCACATTTGTTCATCAATTTCAGGCACATGT
GTACCAAGCAAATGTTCACCTTGAAGGGTTAAACTTGTCTATGTTTGAATCTTCAAGCATATGC
TCAGCATTTCTTGCCAACATTGATGAATGGAAAGAGGCAACTGTGACCTTTCGCGGTCAAAGAT
ACACTATACCACCATGGTCTGTGAGTGTTTTGCCAGATTGCAGAAATACAGTTTTCAATACTGC
CAAGGTTGGTCTATGCTATGGATCATTTTATTGAACATTTTTTGTTTCTTTTGCCTCTTTTGTT
GAATTGAGTCAACCTCCCCCCCCCCCCCCCTCCTTTTTTGGTGTAATGATGTACAATCTTTGTT
TTTTAGCTGATGGTTCTTTTGGGGGGATCTCCTTGATGAATTATAGAGTGATTTGACAGAACCT
TTGATTAAATAAATTTTAGTATTACCTTTGTGCTTGGTTGTTTGCATTTTGGCTGTTAAAGTGA
AATCCTTGTTGTCTATTCTTTTTGCAAGGTGTACATCTCCTTGCTAGACTTGTAGTAATGTTAT
ATTATTTTTGAGGTTGTCTGAAACTTTCTTTCTTCTTTATATTTGTGCAGGTTAGAGCACAAAC
TTCTGTCAAACTGGTAGAGTCTTATTTGCCAACTGTCTCTAATATTTTCCCAGCCCAGCAATTG
AGGCACCAGAATGACTTTTACTACATCTCAAAGTCTTGGATGACTACAAAAGAGCCACTCAATA
TATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTTACAAAGGATCA
ATCTGATTACCTTTGGTATTCAACCAG
						
					

			
		

Sequences
Splice junction sequence	CACTCAATATATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTTAC AAAGGATCAATCTGATTACCTTTGGTATTCAACCAGgtatacacaatggggtgaaagattgcct catagacctgttgaagaccttgcttttgcagttgcacgttttttccaacgtggaggaagctttc aaaactat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 753 Transcript exons: 8532014-8532119,8533114-8533201,8533313-8533434,8534950- 8535153,8535520-8535752 GTATACACAATGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCTTTTGCAGTTGCA CGTTTTTTCCAACGTGGAGGAAGCTTTCAAAACTATTACATGTATTTTGGCGGAACAAATTTTG GCCGCACTGCAGGGGGACCCTTGCAAATTACAAGTTATGATTATGATGCTCCAATTGATGAGTA TGGTCTGCTGCGTGAACCAAAATGGGGTCACTTGAAAGATTTACATGCTGCTTTGAAGCTTTGT GAGCCTGCCCTGGTGGCCACTGATTCACCAACATATATAAAATTGGGTCCAAAGCAGGAGGCAC ATGTGTACCAAGCAAATGTTCACCTTGAAGGGTTAAACTTGTCTATGTTTGAATCTTCAAGCAT ATGCTCAGCATTTCTTGCCAACATTGATGAATGGAAAGAGGCAACTGTGACCTTTCGCGGTCAA AGATACACTATACCACCATGGTCTGTGAGTGTTTTGCCAGATTGCAGAAATACAGTTTTCAATA CTGCCAAGGTTAGAGCACAAACTTCTGTCAAACTGGTAGAGTCTTATTTGCCAACTGTCTCTAA TATTTTCCCAGCCCAGCAATTGAGGCACCAGAATGACTTTTACTACATCTCAAAGTCTTGGATG ACTACAAAAGAGCCACTCAATATATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGC ACTTAAATGTTACAAAGGATCAATCTGATTACCTTTGGTATTCAACCAG
Genomic sequence	GTATACACAATGGGGTGAAAGATTGCCTCATAGACCTGTTGAAGACCTTGCTTTTGCAGTTGCA CGTTTTTTCCAACGTGGAGGAAGCTTTCAAAACTATTACATGGTATGATAGTTGAAGTTTTTTT TTATTTGTATTTTTGGCCTAACAGTTCACTTTTGGCTTCTTTGCTATTCTAAGCTAATGGTTAT CTCATGGAGGATTCTTGTCCAATGTCTGTATTGGATGGCTTTATTATACTGCTGTACTTTTGCC ATATTTTGTTCTGTATTGCCATGCTTTTGTTTTACTATTTCCCTGTCTTTTATTAATAAAATTG CTTTTTATTTTAAATATCCAATTGAAACTCTACTGTAAGATGTGAATGGCCATTACCGGTTTAG AAGCATAAAAGATCTCTGTCTTGATACTGAAAATGCAGAATAAAAGCATATTAAAAATTGAACA GGAAAAATTTGGATAGGTAGAAACAAATATAGGATTCAATGGAGGGATGCCTTTGAGAGGTAAT ATACAACAGCTGAGTAAATACATCCTCACAGGATGGGAAAATGGAAGTAGTTTGATCTATGCCT TTATTAGCAATTGTTTAGAATCATTTTCTATACTGCCTTAGGTAGCCATCAATAGATGTGGAAC TTGTATAGGGGACTGCTGAAAAAATAGAAAAATTATACAGTGAGGGAAGGCCTCTTGAAAAGAT GAACCCCTTATGTAATGTTCCTCTCAAAATCTAATTCAAGAACCATTGCCCAGTTTTAAAGTGA CTGGGAAAGTGAAGGAATATATATTAATAAACATTACTAAGGTCTTTATGCCATTGATGCTTTA AATGTCTTATTTTGCTTTTTCATTCTATAGGATGCCTTGTCCTTTGTTTTGTACTTCCATTTAT TTGTTTCTGGTAATTTATTTTCAATGAAAAATAAACTTAAAAGTCAGTGAGGTGATATCTTCTA ATTGCCACTTTTCTTTATATATTTTAGAATTATTTAGGATGAATATATATGTATTATACAAGGT TTTATCTATATCTGATGTATATTTTAGTCTTTGAGTATCTGTAACCCAGATCTTGACAAGCCCT TTTATGTTACAGTATTTTGGCGGAACAAATTTTGGCCGCACTGCAGGGGGACCCTTGCAAATTA CAAGTTATGATTATGATGCTCCAATTGATGAGTATGGTATGTAGAAGAATAACAATAAGACTGT TGTTTAGATGGTAGCTAATGGGATTCATATAGGCTATAGCAGTTGACATGATTGATGACACTCG ATGAACCTTGTTTTTCTAGGTCTGCTGCGTGAACCAAAATGGGGTCACTTGAAAGATTTACATG CTGCTTTGAAGCTTTGTGAGCCTGCCCTGGTGGCCACTGATTCACCAACATATATAAAATTGGG TCCAAAGCAGGAGGTATGAGCCTAGGCTGAAATAGATATTTCATAAAAATTTCAAGCATTATGG CTTATTACATTTAATATTTTATTGGTAGTTACAGTCAGAGACCTACTCTCCTAAAGCTTAAGCT ATTAGGTAATATGTCACCAATGGCTTATATCTCTACTACTAAGTCTTTTGATGCAAGTACCTTT GGGTTTGAAGTGTATACAATGCATAGGCCACTTTACCTTCTGCTAAAATTCAACTTATAAGAGT CTCAAAGATAGAAGTCCTGATCATCTGGTCATACAGTCTCTCATTCTCATAGCATATTATGAAT CAACTCTCCTAAAAGCTTAAATTATTAGGAGAAGGCGCATGGATTTTTTTACATCTCAGCAGTC ACCTTGATTTTCTGATCTCTGCGCTTCTTTCTATAAAATTGTCGGTTCCTGTTTTCTGATCTTA TCCAAATGGCCATGGCTTGGGGTTCAATCCTTGAAGGGTCATTTGAGGTGCCCTCCAAACCTGA AATAACAATTCAACCATCTGTGGTTCATACCTGACACTCATTCTCTCCAAATAACTGCAACAGA AAAACCCAAAAGTCCAATTTCCCCACCTCAACCCAAAGCATTTTCTCCAAAATCATAAGCTTTC TCAAATCTAACTTAAAAACCCAGCTTCGTTTCCTCTGGACTCTAGCATCATCTAGTACCCTTTT AGCAATGAAAGCATTACCAATAATTTTTCTACTAGTAATAAAAGATAAAATGATTCTCAGAAAT GGCGTCTGAAAGGGCTTCATTCAATCTGGAAGCAAGTACTCTTGTGTGAGTTGTATCTATCCTA TAAACACTAGAAACCGAGTTAATGTTGAAAAAAATCCTTAACTTTGACTGACCTATCCTTTTTA TTTGGGTTCATACAAATTCCTTCTATTGGGGTTCTGAGAGATTTTGGGGTTATGCTGGACCAAA AGGCAAAACCCAAAGACTGTGAGCAGAAGCAGGATTGTAATCTGTTAAATCCTTTATTGATTTT CAGTTTTGCACTCAGCTAGCTCATATTTATATACATAAAATAATGAATGCATCTTATATTTACA ATTCAAGAACTATAATTAGGAATAGAACTGTTCCCTATGATCCTAGTGATCCCAACAATATCCT ACTCCTATTATTTCCAAACTTATTACTGTTATCATTCCTCTTAGAATGTGGGTTTGACCCTAAC TCAACCCCAAAAGCTAATTCATAGGATGAGGGCTTCCCCCCACTTATACACTCTATATTGGCCT TATCTCTAGCCAATGTGGGACTTGGATTTCTCCAAATAATTCCAAACATTTACATGCAATCTTC TTGTGGTGAAATAGATATTATATATTTTACCTTGTGAGAATAGTTGTGTATATTTATCTACTTT GATTAATACATTATGTCTTCACAAGAACATGTAGCCAATCCTACTTTGTGGGATAGGTATGGAA AAATATATGGGTGACTTTTTATTTTTTTCTGAATCACATTTGTTCATCAATTTCAGGCACATGT GTACCAAGCAAATGTTCACCTTGAAGGGTTAAACTTGTCTATGTTTGAATCTTCAAGCATATGC TCAGCATTTCTTGCCAACATTGATGAATGGAAAGAGGCAACTGTGACCTTTCGCGGTCAAAGAT ACACTATACCACCATGGTCTGTGAGTGTTTTGCCAGATTGCAGAAATACAGTTTTCAATACTGC CAAGGTTGGTCTATGCTATGGATCATTTTATTGAACATTTTTTGTTTCTTTTGCCTCTTTTGTT GAATTGAGTCAACCTCCCCCCCCCCCCCCCTCCTTTTTTGGTGTAATGATGTACAATCTTTGTT TTTTAGCTGATGGTTCTTTTGGGGGGATCTCCTTGATGAATTATAGAGTGATTTGACAGAACCT TTGATTAAATAAATTTTAGTATTACCTTTGTGCTTGGTTGTTTGCATTTTGGCTGTTAAAGTGA AATCCTTGTTGTCTATTCTTTTTGCAAGGTGTACATCTCCTTGCTAGACTTGTAGTAATGTTAT ATTATTTTTGAGGTTGTCTGAAACTTTCTTTCTTCTTTATATTTGTGCAGGTTAGAGCACAAAC TTCTGTCAAACTGGTAGAGTCTTATTTGCCAACTGTCTCTAATATTTTCCCAGCCCAGCAATTG AGGCACCAGAATGACTTTTACTACATCTCAAAGTCTTGGATGACTACAAAAGAGCCACTCAATA TATGGAGTAAGAGCAGTTTCACTGTAGAAGGTATATGGGAGCACTTAAATGTTACAAAGGATCA ATCTGATTACCTTTGGTATTCAACCAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.533120748

Conservation Information
Conserved circRNAs	NA
PMCS	0.533120748

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							8532118-8535749(+)
8535711-8533342(+)
						
						Potential amino acid sequence
						
							MYFGGTNFGRTAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYI
KLGPKQEAHVYQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLP
DCRNTVFNTAKVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSS
FTVEGIWEHLNVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGG
TNFGRTAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPK
QEAHVYQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNT
VFNTAKVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEG
IWEHLNVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGGTNFGR
TAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPKQEAHV
YQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNTVFNTA
KVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEGIWEHL
NVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGGTNFGRTAGGP
LQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPKQEAHVYQANV
HLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNTVFNTAKVRAQ
TSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEGIWEHLNVTKD
QSDYLWYST(+)
MLQRINLITFGIQPGIHNGVKDCLIDLLKTLLLQLHVFSNVEEAFKTITCILAEQILAALQGDP
CKLQVMIMMLQLMSMVCCVNQNGVT*(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						cytoplasmic male sterility (acting as miRNA sponges)

Functional Information
Coding potential	Y
Potential coding position	8532118-8535749(+) 8535711-8533342(+)
Potential amino acid sequence	MYFGGTNFGRTAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYI KLGPKQEAHVYQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLP DCRNTVFNTAKVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSS FTVEGIWEHLNVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGG TNFGRTAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPK QEAHVYQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNT VFNTAKVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEG IWEHLNVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGGTNFGR TAGGPLQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPKQEAHV YQANVHLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNTVFNTA KVRAQTSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEGIWEHL NVTKDQSDYLWYSTRYTQWGERLPHRPVEDLAFAVARFFQRGGSFQNYYMYFGGTNFGRTAGGP LQITSYDYDAPIDEYGLLREPKWGHLKDLHAALKLCEPALVATDSPTYIKLGPKQEAHVYQANV HLEGLNLSMFESSSICSAFLANIDEWKEATVTFRGQRYTIPPWSVSVLPDCRNTVFNTAKVRAQ TSVKLVESYLPTVSNIFPAQQLRHQNDFYYISKSWMTTKEPLNIWSKSSFTVEGIWEHLNVTKD QSDYLWYST(+) MLQRINLITFGIQPGIHNGVKDCLIDLLKTLLLQLHVFSNVEEAFKTITCILAEQILAALQGDP CKLQVMIMMLQLMSMVCCVNQNGVT*(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	cytoplasmic male sterility (acting as miRNA sponges)

			
						 Other Information
					
						References
						Zhao et al., 2017a; Chen et al., 2018; Ma et al., 2021a

circRNA

Detail information of GLYMA_08G111000_circ_g.3

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