Detail information of Os06g0644200_circ_g.1


General Information
CircRNA Name Os06g0644200_circ_g.1
ID in PlantcircBase osa_circ_031683
Alias NA
Organism Oryza sativa
Position chr6: 26272900-26273017  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0644200
Parent gene annotation Similar to Pyrophosphate-energized vacuolar membrane proton pump
(EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase
) (H+-PPase) (Vacuolar H+-pyrophosphatase). (Os06t0644200-01);Si
milar to Vacuolar H+-pyrophosphatase. (Os06t0644200-02);Similar
to Vacuolar H+-pyrophosphatase. (Os06t0644200-03)
Parent gene strand +
Alternative splicing Os06g0644200_circ_g.2 Os06g0644200_circ_g.3 Os06g0644200_circ_g.4 Os06g0644200_circ_g.5 Os06g0644200_circ_g.6 Os06g0644200_circ_g.7 Os06g0644200_circ_g.8
Support reads 1
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-TC
Number of exons covered Os06t0644200-01:1
Os06t0644200-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAGCGCGAGGATCTCGCAGGTAGCAATGGCGGCGATACTGCCGGACCTGGCGACGCAGtcctc
tcctcctcctcttcgcgtcgaatcctcctccgagaagaggagagtacatgaatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCCTCTCCTCCTCCTCTTCGCGTCGAATCCTCCTCCGAGAAGAGGAGAGTACATGAATCCTAGC
GCGAGGATCTCGCAGGTAGCAATGGCGGCGATACTGCCGGACCTGGCGACGCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.126412429
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017