Detail information of Pbr016151.1_circ_g.1


General Information
CircRNA Name Pbr016151.1_circ_g.1
ID in PlantcircBase pbe_circ_000098
Alias pear_circRNA_0001018
Organism Pyrus betulifolia
Position chrscaffold24.0: 567084-571871  JBrowse»
Reference genome Pyrus_bretschneideri_scaffold
Type   i-circRNA
Identification method find_circ, CIRI
Parent gene Pbr016151.1
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCCCCAGGTGGTGTTTGTAGCCTCGCTACGAAAGCTTCCTATCCGATTAAGTAATGTATTAAT
GAAAGGGTGGACTGAGCTTCTCCACTTTGCCTATAGgttataagtactacagacaaaaaccgta
ggctgtgaaaatgcctgtattttgtatttgctaaaagtatggtttatgaaattacactatttta
cctttata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATAAGTACTACAGACAAAAACCGTAGGCTGTGAAAATGCCTGTATTTTGTATTTGCTAAAA
GTATGGTTTATGAAATTACACTATTTTACCTTTATATTCAACAATGAATTTTCCTACCCTGCTT
AGGCTAAATTATTAACCACAGCTGCAACGGCAGTTTGATGGATTATGCCTTTGAATACATATAG
CAAAACAGAGCAAGTGACAAAACGAGCATGCTTCCCAGATGACTGGTTATGGAACGTGCCTTCC
ACAGTGAAAACCAAAAGGTCTTTTTTGAAAGCTTGAGACGTCCCTAACAAAACTTCAGAAGGAA
TCTTCCTCAAAATATGCCATCTTGACTTCCAAAATGCCTAAAACGTCCAAAAACGTAGCGCTGC
ACGTTGGGCCTTCTTTTCCTCACCACGGTCAAAAGGCTCGATAGAAAAATCTGAAATTTTGATA
CAATTATCTTGAAAGGCTCGCGAACATCTTTCAACTAGAATCACTCCAAAATTCATCGGTTTAA
TCACTTTTTGCTCCAAAGGAAGTCGAATGTGCTACATTAGAAATATAATTTAAAGTATCAAAAT
CTCATCAAAATAATCAATAAATAATATATGGTATAATATGGACTCATCAGTTGTCATCACAAAG
TCCTCAGTTCCATCGGTACTTTGTGAACATTGACTTTTGAGAAAAACCTTGCGATTATTTCAAT
ATTCATCATCTTGGGGACTTTTGCATCTCAAGCCTCATCGCGAACATTGTACGAAGCTTCAATT
GCTGCAAAATATGATCTGTGGATGGCAAAGTACGGACGCGTTTATATGGACAGTGAAGAAAAGG
AAAGGCGTTTCGCCATATTCAAGAGCAACGTCGAGTACGTGGAGAAATTCAACCGTGATGAAAA
TAACACATACAAGTTAGGACTCAATGAATTTGCTGATTTTAGCCACGAAGATTTCGTCCAACAA
TATACTGGATACATAAAGCCCAATGAACAGACATCATCCGCAGATGTATCTTTTAGGTACGAGA
GCTTAGGCGGTCCTGATGTTCCCCTTAGCATCGACTGGAGGATGCATGGAGTCGTCACCACGTA
AAGAATCAAGGACCCTGTGGTAAGAGTCTAAGGGACCCTTTTTTATATTACTATCTTAAATGTT
TTTATTCTTTCTTAGTCCATATCTTACCGATATTTGAACATATCGGCAATGTATCAAGTACAAT
AGAACACATCCCTATTCCTCGGTTTTGTAGTATGTATTGACATTCATATTTTGTGTTATATATT
GCAGGTTGTTGCTGGGCATCCTCTGCAGTGGCTGCTTTGGAAGGGATTATCCAGATCAGAACAG
GTTAGTTGAGATCACTATCCGGGCAACAACTTGTGGACTGTTCCGGAGATTACGAAAACAAGGG
CTGCCATGGTGATACTATGGTGACTACCTTTGAATACATACTGCAAAATCGAGGAATCGCAAGC
GAAGCAAATTACCCATACGAGGCTACTGAGGGAATATGCCACGCTAACAACTCAAATTGGCACG
CTTCCAGTGCATGTATAACCGGTTACGAATTAGCTCCTCGCAACCGCGAAAGCGATCTAATCAA
GGCCGTGTCCATGCAACCGGTTTCAATTGGCATTCTTGTCACCTGGCTGGACTTTAGATTTTAC
AAAAGCGGGGTCTTCACCGCTGTACAAGGCTGCGGGACAGTCCCAAACCACCGTGTCACCATTG
TTGGCTACGGGCGAAGCTACAGAGGGACAGGGAAGGGCGGCAGCCCCTCCCCTAGGTGGAAGTG
AAGCCCACGAGCGACGGTTCGCCCCTCTGCTCCCGTCGGAAAACCTGCAAGTCGTGAAGCCCCT
TCCTAATCGGAAAGCACATTAGGCGAGACTAGGAGGGAGGGATTAAGCAGAGCTATTCAAGTCT
GGGCGAGGTTGGGCGGGGCGGGGTGGGGCTAAATATAATTTTGTTAAAAAAAGTGTTTAAATTT
AATTAATTTATATAATAGATTATAAATTTATTTATATCCGCCTAATTTGCCTAGACCCTGCCTA
CCCGATATCCCAACCCGTCGCCCGATTAATGCTAGCTTATTTTAGAACCTTGTTTTACAAACCC
CTTTTCTAATTCTTTGCCTCCTGTGTGCCCAGATTGGCTGCAGTTTGCAGCATTCAATCAACCA
ACAACAGCCTTGCAGCTGCTTTCCGTTCCATTCCAAGTGAAAGCCAACATAGTCAATTTGATAC
TTTCGAGTGGTTGGAGTAAAATATAGCAAGAGATTCTGCATTTTGCCGTTATTGCTATATTTTC
AAATGAAAACAGGAGATGTTGGCAGTGATGTCTTCACTGAAAAGGGTTTTTAATGTAACTTGTT
TGTATTGATAAACTATAGACGATATTACTAAATGGACTTGGTTGTTTCCCTTTTTTTGAACTTT
GCACTTTTAAATTCGCCCCTCCCCCTTCTAATTCCTGCCTTCGCCACATACTACAGATGGCACC
AAGTACAGTATATTCAAGAATGAATGGGGTGAGAGCTGGGGCCAAAATGGCTACATGTGAATTC
TCAGAGATGCTGGCCTCCTAAAGGTCTTTGTGGCCTTGCTACAACGGCTTCCTACCCAATTATA
GATTGATCGTCTCTGCATCAAAGACTACAGTTAAGTTGTGTAAATCTAATTTTCTTCCCAATAT
TTCGAAAGCTCCGTCGATAAAAAGGGTTTGTATTTTGTATCTGATTAGCATAACTGAAGACGGC
GTCAAGTTGTCTTGAAAAGAATATAATTAAGTGTGTGAATCTAATTTTCTTTTCATTTAGGTGT
GCAGAGTTTTATCTCAAAATACCTCGATTCTCTAGACCTAAAATTTTAGATAGTTCTTCCACTT
GATGAAGTTGAAACTTGATATAAATTAGAGCAATTTTCATCAATTAGCTGAGCATAAAATTAAT
TCAGAAGATCTGCTACCGCAAGAGAATTAGTTTGAAAAGGATACTTAATTACGTGAAGAGCACT
TTGAATGCCAGTCGAGCAACTCTGAGTTGGAGGGCCACTGCATTGACTTACCATTGCTAGTACT
TGAATTCCAAAAATCATCATCAAATACTGGAGTTTTAAGTTCAAATTTCATGAACCTCACCCCA
ATTCCGTATGATGAGGTTCACTGCTGCAGATTGGTAAATTTGTGGTCATCAGCACCATTAACGG
AAACTAAAGGCCAAGGGGCAAAGACTTCAGCAATAGACCAAGGACTTGTAGTCATCAGACCCTT
GATTCATCAATGGATCGTTCGAACTTCTTTGTACACAAACTCCTCGGCGAAAACAAAACAAGCG
TAGCGTTCGGGCTAGATTGATTGATGAAGTTTACCGTGACTTGAGTCATCAACCCGTGGAATGT
GCCAGGAAATTTGGCTCCCTTCTAAATTCCCATCCTAACAATTTCAACAAAGTGCACATGCAGG
ACATCCCGAACGCCTTCTATATAAACCGGTAATATCATGCTTGCTTCTTCACATCCAGCTTGCC
AATCACTACTTGAAACAAAGCCATTGTCGACACAGAGCGCCCTCTCATCACCGCAATGGCTTTT
GAAAGAAACCTTTTGATTGTTACCATACTCGTCACCTTGGGGACCTTGGCATCTGAAGCCACGT
CCCGCACATTGTACCAAGCTTCCATTGCTGCAAAACATGAGCAGTGGATGAAAAAGCATGGACG
CGTTTACCAGGACAGCGCAGAGAAGGACAGGCGTTTCCAAATTTTCAAAAACAATGTGGAGTTT
GTCGAGAAATTCAACAGTGAAGGGAACATGACTTACAGCCTACGCATCAACCGATTTTCGGATA
TGACCTATGATGAATTCCTCAGGCATTATACTGGATACAAGCAGCCCACTGAATCAACCTCATC
CGCAGTTGCATCTTTTACATACGAAAACCTAAGCCCGGCTGATGTTCCCCAAAGCATTGACTGG
AGGGAGAATGGAGCAGTTACTCCAGTAAAATTTCAAGGGAGCTGTGGTAAGAGCACCAACCTCC
ATATTAACATAGGGCTAAGCTTCCTTGTACATATGTATGTATTGCATTAATTACTTTCTTCGTG
CATTCATTCCTACGGAAATTAATTCATATCCGTTTGTTCGAATAAATGCAGGTTGTTGCTGGGC
ATTTTCCGCAGTGGCTGCAATCGAAGGGATTACCCAAATCAAAACTGGCAAATTGATCTCACTG
TCTGAGCAACAACTTGTGGACTGTGATACAGATAACAATGGCTGCCAAGGTGGTTGGATGGGTA
ATGCCTTTGCATACATTCAACGAAACGGAGGAATTGCCAGTGAAGAAAATTACCCATACCAGAG
TTTAGATGGCAGTGCCGGAACATGTGACATGAACAAGGCAAATGAGGCTGCCGCCCAGATTACT
AGTTATGCAGAGGTACATCCCAACAGTGAAACCGATCTACTCAAGGCTGTGTACATGCAACCAG
TCTCCGTTGCCATCAATACGTCACCAGCCTTTCAGCATTATTCAGGCGGGGTGTTCACGGGCGA
TGATTGTGGGACAGAATTGAACCACGCTGTTACCATCATTGGGTATGGGACAGCTGAAGATGAC
ACCCCCTATTGGTTAATCAAGAATTCATGGTCCGATACGTGGGGTGAGAATGGCTACATGAAGA
TTCTTAGAAACGCCGAAGCCCCAGGTGGTGTTTGTAGCCTCGCTACGAAAGCTTCCTATCCGAT
TAAGTAATGTATTAATGAAAGGGTGGACTGAGCTTCTCCACTTTGCCTATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Wang et al., 2018a