Detail information of BGIOSGA033223_circ_ag.1


General Information
CircRNA Name BGIOSGA033223_circ_ag.1
ID in PlantcircBase osi_circ_008575
Alias Chr10:21017865_21023009(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18061259-18065863  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TT-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCAGAATGGGCAGGTTGAGAGGGTGCACTCCATGCATCAGGCTATGGAAGAGAGTGGTATTG
TTCCTGATGTATCCACTACTCACACTCTGGTGGCAGggttggtcaggcgtcgaaggcagcagat
ctcacaaagaaagcacttgcttctgcgagtaatgaatggatacctgacctgacgaatgtgctga
tgagcctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTGGTCAGGCGTCGAAGGCAGCAGATCTCACAAAGAAAGCACTTGCTTCTGCGAGTAATGAA
TGGATACCTGACCTGACGAATGTGCTGATGAGCCTGAACTATTTCGCGGAGCAAAAGAATGTCG
AAGCAGCTGAGGAGATGATGAGCTTATTACAGAGATTGGTTACTCCAACAAGGGACATTTACCA
TGGGTTACTGAAGACATATGTCAATGCAGGAAAACCAGTGTCAGACTTGCTTCGTCGTATGAAA
AAAGATGGTATGGAGGCTGATGAGGAGACAGAGAAAATCCTTGCGGGAGAAGTCCACTAGGTAC
ACAGGATTGAATAAAACATATCACTGACCAATTCCTTTTCTTTGCTTATTTTGCTGTCCTTTTT
CTTGTTTCTGGGGCAATGAAGTTCAAACCCGCTAGCCCGTGGATTTGAGTATTTGATAATAAAC
CACTATACAACTGCTTATATAGGAACTCGCCATTCTTCTATGCATGTGATGGTGTCATTGTGCT
GTGCGGATATGTCTATGTCTTTGCCGTATGGCTATGTGAAATTTTGCAGTAGTGGTAGGATCTG
AGATGTTTAGTATTTTACCTTTTGTTTTCATGGAAGGCCTGGTTTTCCTTGGCACGCATCACTC
ATCATGAGCTTGAATGAATGATCAATGATCAATCTAAACTAGTGTCGCGTGTTTACACGATTAT
AACCTCCTTCTCTATAAAGATGTATAATAATTAACTAATTTTTTAAAATAATATTTAATAACAT
AAATTAGTATTTTCTCCTTTTATAATATAATTTGTTTATATTTCCCTTGTAATAGATATAATTT
TAGTAAATTCAATTCTATTCTACATAGATGTTCAGAGAACATATTTAGCAGGAAACCTAGTATG
TCTTTTTTTTATTTTACACAAAAGGCCATTTATTTAAATAAGTTGTATAGAAATGTCAATTGTG
AGAATTAAAATTAATTACATGATTATACTTTTAAACTGACATGATTTTTAGTTCTTTTATGGTC
AGAATGTTAATTTACAACAGTTTAAAACTTTAAATTATCGGTTGCAGCTGGTGGTGAACTGTCA
CTATTCTCTCTTCACAGGAAGTCCACGTTAATTTGAATAATCAAGTGGTTATTGTTTTTCGGTT
ATATATTTGCCAACAATAAATTCTTTTATGAATAATTCAGTATGTACAATCTTACATTGGGGTA
AAACTTTGCCAGGATATAAATGTACAACCATAAAAATATAGATAAAATTGGCCATGCGCATAAA
TCAACAAACGGTTCATACAAAGAATAAAAATTAGAGAAACTAAATTATTGCATTGCTCATTGAA
AAAAGGGATCAGGATCCTCTGCAGTCGAAGTCACGTGACTTTGTCATTGACATATGGGCCCAAT
GATTCTTGGACCCATATGTCAGTGATAAAGGCACCATGCATTTGACTGCAGAGGACCTCAATCC
TGACAAAAGATGTACAGATTTCAGAAATGCCAAGCTCTTTCATTTGGTTGTGATGGAATCCAAG
AAGAACTATTAAACATGAGAAATAATTCATTGCAATACAGGAAGTTATTGTCTACGGGCGAACT
TCTACCGCTTAGATTTTCTCATGTTTAATAGTTCTACAAGAATATACACTGGATTTTCACTAAA
TGCATGTCTCCATAGACAATCTGAGTTAGAAAATTTTTTTAGCAATTTGACGCATTATGATGCA
TATCGTTGCCTTGGATATTCTTATGAGAATATTACTTTGCCCAGATTCACTAAACTCCAGGAAC
ACTTCATATTTAAGAAAATGCAGTTTGAGATATGTATAAGTGCAATCAGCTGCTGCCTTGTTAC
AGGACCTTCTAGGTGCACACAATTAGTACCAGTGTGCTCATGGTGCAGATTCCTTTGAAATGCT
AATGGGGTGAACACCGTGAGTTCATAAGTAATAAACCGTTTGCAGTGGCGCCATTAATCTTTTG
TTTATGTGTTAATCTTTTTTTCGTAAATTTTCTGATTTTTTAAACACCTGGAGTAAGGGCATGA
TTTCAGGTTACTCCTTCTGTAGTTGGGGAATATTATTTTTGTACATCATCAACTGATTTCAATC
ATTCAATGGTGAAATCGTTGAAATGAGCAGAAAAAATGACTCATGTTGAAAATGGAAGTAGTAC
TTTCTCTTAATGAGGATGAAAGATTCATACAATCATACTTCCTAATATATTTTCTGATGCAATT
TAGGAGCACCAAGCACATACTTACCCTGTTGCCTGACAATCTCATTTGTGCTCTCTTAATATGC
TTTGCATTCATAAACCACCAACAAAATGTAAAATTATGTTATGAACTGAACTGAAATCATGCAT
CAGCAAAGGAATGCTTTTAATTGTACATGTTGAAAAGTATATAGTTTAACATGATTTACAAGTT
TTATTACATTAAACAGCAGCAAAAGTTTCAATATCCAATAAAAATTTCGATTTAGGAAGCAAGT
TGTACTTTGCAGCATAACTAATATTCAAAACATCATTCAAGAATACCCATGTTTTGCTCCAGAG
AAGGAGCTGTGATGTAGTAATGTCTAACCTTGGAGATGGGCAACTGATATGGCAGTTGGTTCCG
GCAGTGGAGGTGAAGATGCTGCTCTGATCATCCCTCCTTGCAGGGGTGTGAATCCTTTACCATA
ATGTCATTACCATTATAGTCACTAACATGGAGGTTCCATCCTCTTATTACTCCACACGTCAGTG
GTTGTAGTGGTAGTACCATTATGGTAGAGGATGTGAATTTTTACGTTTCATGGGATAGGGAACT
TGTCCCTGAAGAACCTCGAGTATTTGGTCGGTGGGTGCTCGCACTGCCCCTGGCAGGCCAGCTA
TAGTAGGTGTCGTACGTTGCTAAACTTGTAGCATGTGCTATCGCAACCCCCCGTCTCCGGCTGA
TCTCGACGGCGCACGTCAGTCAGCGTATCTTAGTGCAGCGAGCGACATTTTTGGTTGGCTGAAA
GCTCACCGGCACGTTGAAGCCGTCGATGACGCCGGGGTTGCGACTTGCGAGCGTGTACCTGGCC
AACGTCGTGCCAGTGACAGTGTGGGCCATCGTGTTTTGGGCAGTCGCCGGTGATGCAGTGGCCG
CGGTCAGCGCCGTTAAAGCTGCAGCCCATGCTCCGCCGCCGTTTTGGATCCGGGAGAATCTAGC
CGCTAGGATTCCTATGGTGACCTTGGCTGTGTTCGAGGGAGAAGGGATTGGGAAGATACGCAAA
ACGAGGTGAGTCATTAGCGCATGATTAATTGAGTATTAACTATTTTAAACTTTAAAAATGGATT
AATATGATTTTTTAAAGCAACTTTTCTATAGAAAATTTTTATAAAAAACAAACCGTTTAGTAGT
TTGAAAAAAGTGCGTGCGGAAAACGAGTCAGTCTCCCCTTTCTCCTGTCAACGTACGCAGCCCT
TGTGAGGAGAAGAAGAGTAGGTGGTGGCGGTGATGCCTTGTGCCGCGCGCAGGGGAGGAGACAG
GGGGATTGCGGTTCACGCGCGAGCTATATTTGATTGGACTAGATGGGCCTCGCTGATCCGCTGC
TACCGCAGCTGGGCTTGCCCATTACGCGTTGCTATAGACGCCCTTTCTTTTTTTTTTCTTTTTT
TTTTTGCGATTTCCTTCCCCTCTCCCCTCCCAAAACCCTCGCCCCGACTTCGCCGGAGCGCCGA
CGCCGCCCCCCCCACCATGCTGCTGCACCGCCGTGGTCTCCTCCTCCTCCGCGGCGGCGGCGGC
CTCCTCCGCCGCCTATCAGTGGCGGTCGAGGAATCCGTCTCCCCGTCGCCGCCTCCTCCGCCGC
CGCGGCAACCGCAGGAGGACTCCGTGGATGACGAGGAAACGGCCTCGCCCTCGCCGGGGAAACC
GCAGGAGGGCTCCGTGGCCGCCGAGGAGAGAGCCTCTCCCTCGCCTCCTCCGCCGCGGCGCAAG
AAGGACTCCCTCTTCCGCCGGGTCGCGGCCGCCGCGGACCCGCGCCTCCCGCTTTCCCCCGTCC
TGGAGCAGTGGTGCCTCGCCGAGGAACGCCCTATCGCGAAGCCCGAGATCCAGTCCATCATCAA
GTATCTCTGCCGCCGCCGCCGCTTCTCTCAGGCGCTCCAGGTGCGGGACGAACGACGAATCTAC
GAATCCCCTTGTTTCACCACTTCCGTCGCCGCATCATTCGATTTTGTTTTGTTTTCTTTTCTCT
TGCAGCTTTCCATGTGGATGACCGAGCGGCTGCACCTCCATCTATCCCCCGGCGACGTCGCGAA
TCGGCTGGAGCTGATCACCAAGGTCCATGGCCTAGACAGGGCCGTGGAGTACTTCGACAGCATG
CCAGATCAGCTGAAGCAACAGCAGTGCTATGGCTCCCTGCTTAAATGCTACGCCGAGGCCAATT
GCGTGGAGAAGGCGGAGGAGCTCTTCGAGAAGATGCGGGGCATGGGGATGGCCAGTTCTTACGC
TTACAATGTGATGATGAGGCTTTATTTGCAGAATGGGCAGGTTGAGAGGGTGCACTCCATGCAT
CAGGCTATGGAAGAGAGTGGTATTGTTCCTGATGTATCCACTACTCACACTCTGGTGGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021