Detail information of 5_circ_ag.11


General Information
CircRNA Name 5_circ_ag.11
ID in PlantcircBase ath_circ_040529
Alias At_ciR563
Organism Arabidpsis thaliana
Position chr5: 9209270-9229793  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 5_circ_ag.13 AT5G26260_circ_g.1 AT5G26260_circ_g.2 5_circ_ag.3 AT5G26260_circ_g.4 5_circ_ag.5 5_circ_ag.6 5_circ_ag.7 5_circ_ag.8 5_circ_ag.9 5_circ_ag.10 5_circ_ag.11 5_circ_ag.12 5_circ_ag.13 AT5G26280_circ_g.1 AT5G26280_circ_g.2 AT5G26280_circ_g.3 AT5G26280_circ_g.4 AT5G26280_circ_g.5 AT5G26280_circ_g.6 5_circ_ag.7 AT5G26280_circ_g.8 5_circ_igg.9 5_circ_ag.10 5_circ_ag.12 5_circ_ag.13 5_circ_ag.14 5_circ_igg.15 5_circ_ag.16 5_circ_ag.17 5_circ_ag.18 5_circ_igg.19 5_circ_ag.20 AT5G26290_circ_g.1 AT5G26290_circ_g.2 AT5G26290_circ_g.3 5_circ_ag.4
Support reads 6/2572
Tissues leaf/root, seed, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACCATCGAGTAAGATTCTGACAATAACAAACTTCTCTGTGATTAAGGGCAGAGTAGAACCCTA
TGAATCCTCTGTTTTTGAGGCTGCTGGTTACAAATGgagattggttttgtacgtgaatggtaat
aaaaacgacggtggaaatgatcatatttccctttacgcaaggatcgaagagacaaactctcttc
cattaggt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1152
Transcript exons: 9209270-9209441,9209589-9209873,9209963-9210133,9210240-
9210423,9226406-9226529,9226619-9226787,9229747-9229793
GAGATTGGTTTTGTACGTGAATGGTAATAAAAACGACGGTGGAAATGATCATATTTCCCTTTAC
GCAAGGATCGAAGAGACAAACTCTCTTCCATTAGGTTGGGAAGTGAATGTTGATCTCAAACTCT
TTGTCCATAATGGGAAGCTACACAAATATTTGACTGTTACAGGTTAGATGGCTTAGTGAAGCGA
TATAACAATGCGAAAAAAGAATGGGGTTTCGGACAATTGATTCCTCGATCAACATTCTACAACG
CGAACGAAGGTTACCTTGACCAGGACACTGGTTCTTTTGGTGCTGAGATCTTTATTGTTAAACC
GGCTCAACAACAAGAGAAAGTTACATTCATATCAAACCCTCCAAACAATGTTTTCACTTGGAAG
ATACTTCGTTTCTCTACCTTGGAAGATAAATTCTATTACTCCGATGATTTTCTCGTTGAAGACC
GATACTGGTAGGAGACTAGGATTTAACCCGAAAGGGGATGGAGGAGGAAGACCACATGCACTTC
CAATCTTCCTATTTGCTCAAGGCCATAAGGCAAATGCAGTTGCTACAAACACTTGGGGAGCGGT
TAATCTGCGGTTAAAGAATCAACGAAGTACTAACCATAGACAAATATATTGTCTGCAGCTTGGT
ACCCGATTGGAAGCGGTTATGGTGTGGGAGTGAACAATATCATACTGTTAGCTGATTTAAACGA
TGCATCAAAAGGATATTTGGTGAATGATGCCATTATCTTTGAAGCTGAAATGGTTAAGGTCTCT
ATAACCAACATCGTCTCCGCTTAAATATCTGCACTTCTTTGTCTGACAAGAGTGTGGAGGGATG
ACCGACCATCGGATAAGATTCTTTCGATAACCAGCTTCTCAATAATTAGGACGAGACCTGAACC
CTATGAATCCTCTGTTTTTGAGGCTGTTGGTTACAAATGGGGAGATTGGTTTTGTACGTGAATG
GTAATGAAAAGGACGGTGGAAAAGATCATGTTTCACTTTACGCGAAGATCGTAGAGACAGAATC
TCTTCCAGTAGGATGGGAAGTGAATGTTGATCTCAAACTCTTTGTCTACAATGGAAAGCTAAAC
AAATATTTGATTGTTACGTAGAACCCTATGAATCCTCTGTTTTTGAGGCTGCTGGTTACAAATG

Transcript length: 1228
Transcript exons: 9209270-9209441,9209589-9209872,9209961-9210133,9210240-
9210466,9226401-9226529,9226619-9226810,9229743-9229793
GAGATTGGTTTTGTACGTGAATGGTAATAAAAACGACGGTGGAAATGATCATATTTCCCTTTAC
GCAAGGATCGAAGAGACAAACTCTCTTCCATTAGGTTGGGAAGTGAATGTTGATCTCAAACTCT
TTGTCCATAATGGGAAGCTACACAAATATTTGACTGTTACAGGTTAGATGGCTTAGTGAAGCGA
TATAACAATGCGAAAAAAGAATGGGGTTTCGGACAATTGATTCCTCGATCAACATTCTACAACG
CGAACGAAGGTTACCTTGACCAGGACACTGGTTCTTTTGGTGCTGAGATCTTTATTGTTAAACC
GGCTCAACAACAAGAGAAAGTTACATTCATATCAAACCCTCCAAACAATGTTTTCACTTGGAAG
ATACTTCGTTTCTCTACCTTGGAAGATAAATTCTATTACTCCGATGATTTTCTCGTTGAAGACC
GATACTGGTTAGGAGACTAGGATTTAACCCGAAAGGGGATGGAGGAGGAAGACCACATGCACTT
CCAATCTTCCTATTTGCTCAAGGCCATAAGGCAAATGCAGTTGCTACAAACACTTGGGGAGCGG
TTAATCTGCGGTTAAAGAATCAACGAAGTACTAACCATAGACAAATATATTGTCTGCAGCTTGG
TACCCGATTGGAAGCGGTTATGGTGTGGGAGTGAACAATATCATACTGTTAGCTGATTTAAACG
ATGCATCAAAAGGATATTTGGTGAATGATGCCATTATCTTTGAAGCTGAAATGGTTAAGGTCTC
TATAACCAACATCGTCTCCGCTTAAATATCTGCACTTCTTTGTCTACGATCAATCAACCTTATG
AATAAAAAGATGTTTAATTTGATGGGAGTGACAAGAGTGTGGAGGGATGACCGACCATCGGATA
AGATTCTTTCGATAACCAGCTTCTCAATAATTAGGACGAGACCTGAACCCTATGAATCCTCTGT
TTTTGAGGCTGTTGGTTACAAATGGGGAGATTGGTTTTGTACGTGAATGGTAATGAAAAGGACG
GTGGAAAAGATCATGTTTCACTTTACGCGAAGATCGTAGAGACAGAATCTCTTCCAGTAGGATG
GGAAGTGAATGTTGATCTCAAACTCTTTGTCTACAATGGAAAGCTAAACAAATATTTGATTGTT
ACAGGTACTTTAAACTGTGAATGGACAGAGTAGAACCCTATGAATCCTCTGTTTTTGAGGCTGC
TGGTTACAAATG

Transcript length: 1365
Transcript exons: 9209270-9209442,9209589-9209873,9209963-9210148,9210240-
9210473,9226136-9226166,9226261-9226368,9226404-9226529,
9226619-9226790,9229744-9229793
GAGATTGGTTTTGTACGTGAATGGTAATAAAAACGACGGTGGAAATGATCATATTTCCCTTTAC
GCAAGGATCGAAGAGACAAACTCTCTTCCATTAGGTTGGGAAGTGAATGTTGATCTCAAACTCT
TTGTCCATAATGGGAAGCTACACAAATATTTGACTGTTACAGGTATAGATGGCTTAGTGAAGCG
ATATAACAATGCGAAAAAAGAATGGGGTTTCGGACAATTGATTCCTCGATCAACATTCTACAAC
GCGAACGAAGGTTACCTTGACCAGGACACTGGTTCTTTTGGTGCTGAGATCTTTATTGTTAAAC
CGGCTCAACAACAAGAGAAAGTTACATTCATATCAAACCCTCCAAACAATGTTTTCACTTGGAA
GATACTTCGTTTCTCTACCTTGGAAGATAAATTCTATTACTCCGATGATTTTCTCGTTGAAGAC
CGATACTGGTAGGAGACTAGGATTTAACCCGAAAGGGGATGGAGGAGGAAGACCACATGCACTT
CCAATCTTCCTATTTGCTCAAGGCCATAAGGCAAATGCAGTTGCTACAAACACTTGGGGAGCGG
TTAATCTGCGGTTAAAGAATCAACGAAGTACTAACCATAGACAAATATATTGTAAGAAAAATAA
CCAACTGCAGCTTGGTACCCGATTGGAAGCGGTTATGGTGTGGGAGTGAACAATATCATACTGT
TAGCTGATTTAAACGATGCATCAAAAGGATATTTGGTGAATGATGCCATTATCTTTGAAGCTGA
AATGGTTAAGGTCTCTATAACCAACATCGTCTCCGCTTAAATATCTGCACTTCTTTGTCTACGA
TCAATCAACCTTATGAATAAAAAGATGTTTAATTTGATGAGTTTGTTCCTCTTCCGCTGAGCTC
CTCATTAAACAGGAGGCCACAGAAGGCAGAGGAATAGAATACAACAGTTCTCACAGTTCACGAA
TGGTACGTACACTTATTTTCTTTCTTTAGATTTTATTGGTTAAAACTTAAAACTGTGGTGACAA
GAGTGTGGAGGGATGACCGACCATCGGATAAGATTCTTTCGATAACCAGCTTCTCAATAATTAG
GACGAGACCTGAACCCTATGAATCCTCTGTTTTTGAGGCTGTTGGTTACAAATGGGGAGATTGG
TTTTGTACGTGAATGGTAATGAAAAGGACGGTGGAAAAGATCATGTTTCACTTTACGCGAAGAT
CGTAGAGACAGAATCTCTTCCAGTAGGATGGGAAGTGAATGTTGATCTCAAACTCTTTGTCTAC
AATGGAAAGCTAAACAAATATTTGATTGTTACAGGAGAGTAGAACCCTATGAATCCTCTGTTTT
TGAGGCTGCTGGTTACAAATG

Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.375348539
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017