Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G01020_circ_g.4 |
ID in PlantcircBase | ath_circ_035819 |
Alias | At_ciR2223, Ath_circ_FC3090, Ath_circ_FC3091, AT5G01020_C1 |
Organism | Arabidpsis thaliana |
Position | chr5: 7705-8139 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder, circRNA_finder, find_circ, CIRI2 |
Parent gene | AT5G01020 |
Parent gene annotation |
Probable serine/threonine-protein kinase PBL8 |
Parent gene strand | - |
Alternative splicing | AT5G01020_circ_g.1 AT5G01020_circ_g.2 AT5G01020_circ_g.3 AT5G01020_circ_g.5 |
Support reads | 4/21/2 |
Tissues | leaf/root, whole_plant/seedlings |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G01020.1:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.554438755 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
7742-7707(-) |
Potential amino acid sequence |
MLRGSLENHLFRTQQLQKKHSRSVSDLSDPSTPRFRDDSRTPISYAQVIPFTLFELETITKSFR PDYILGEGGFGTVYKGYIDDNLRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVK LIGYCCEDDHRLLVYEFMLRGSLENHLFRTQQLQKKHSRSVSDLSDPSTPRFRDDSRTPISYAQ VIPFTLFELETITKSFRPDYILGEGGFGTVYKGYIDDNLRVGLKSLPVAVKVLNKEGLQGHREW LTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMLRGSLENHLFRTQQLQKKHSRSVSDLSDP STPRFRDDSRTPISYAQVIPFTLFELETITKSFRPDYILGEGGFGTVYKGYIDDNLRVGLKSLP VAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMLRGSLENHLFR( -) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | response to drought stress |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017;Pan et al., 2017;Chen et al., 2017a;Zhang et al., 2019 |