Detail information of AT2G33560_circ_g.4


General Information
CircRNA Name AT2G33560_circ_g.4
ID in PlantcircBase ath_circ_016292
Alias NA
Organism Arabidpsis thaliana
Position chr2: 14214130-14214805  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G33560
Parent gene annotation BUBR1
Parent gene strand -
Alternative splicing AT2G33560_circ_g.1 AT2G33560_circ_g.2 AT2G33560_circ_g.3 AT2G33560_circ_g.5
Support reads 1
Tissues aerial
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33560.1:4
AT2G33560.2:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTGGTTTCCAAGTTAAGTTAATGTGACTCACTATTATCTCCCCTGGACAATAAAGTGCCAAA
GCTTCTTGACGGTAAGTCATTATTCTCCTTTGGTTCtctgtacattcttcttcatcgacaaaaa
cctcaaaggtggaagcagatgctgctgcaacagttctcacaatgggtttctgaggaacctgtga
caataaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TCTGTACATTCTTCTTCATCGACAAAAACCTCAAAGGTGGAAGCAGATGCTGCTGCAACAGTTC
TCACAATGGGTTTCTGAGGAACCTGTGACAATAAATATAAATGCAGTTAGTGATCAATTTATAG
AGATAGTATGAGCCAAGTGAGATAGTTTTGTTTAGGAGGGTAGAGGGAAAACCTTGAATGATGC
CCATTTTCTAGGTAAAGAATTGTTTTCTTTGTTCCTCTCTGCTCTGCCTCCAAGCATGAGCCAA
CTACCAAACTCTGGTCTTGACTTGTCTGACTCTGGTTGATTCCCTGATGTGGTGTCTGAAACTG
CATCTGCGTAGATAGCAAAAGGTGTCTTGGATGATCTGCAAAAGACAAAGTTGCTTACCATAGT
GAGTTGCAGAATAATTTAAAGGTATGAGTTGATAGAAAATGCAGATAATGAAAACAACGAGAAA
TATAGAACCAATCAAACTACTTACTGATTTGGCTTTAGCTTTTTGGCTTGTGGGTTAGAACTTC
CTAACGCCTGCCTTCTTGCATCTACAGAAAACATTTTCATGTAAGATAGCTTACCAAAACATTT
CAGTGGTTTCCAAGTTAAGTTAATGTGACTCACTATTATCTCCCCTGGACAATAAAGTGCCAAA
GCTTCTTGACGGTAAGTCATTATTCTCCTTTGGTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.129559579
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017