Detail information of AT2G06025_circ_g.1


General Information
CircRNA Name AT2G06025_circ_g.1
ID in PlantcircBase ath_circ_012955
Alias NA
Organism Arabidpsis thaliana
Position chr2: 2350202-2350674  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G06025
Parent gene annotation Acyl-CoA N-acyltransferases (NAT) superfamily protein
Parent gene strand +
Alternative splicing NA
Support reads 8
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G06025.3:2
AT2G06025.4:2
AT2G06025.2:2
AT2G06025.6:2
AT2G06025.1:2
AT2G06025.7:2
AT2G06025.5:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCGTTTATGGCTGATTGATTTTGTGTTGGTTCGAGTTTGTGTTAGACTGCAGCTTGGCTTCG
TGCAGAGAGTCACTGGGAAGATCGCTCCAATGAAAGgtcaaactttgctttctggtacggcggc
gatgtcgacgatttcgatccatcggactgagactctacgaatcactcacgctcggtcacgaatc
ttccggca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 391
Transcript exons: 2350202-2350539,2350622-2350674
GTCAAACTTTGCTTTCTGGTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGAGACTCT
ACGAATCACTCACGCTCGGTCACGAATCTTCCGGCAGAGATATCGGAGAACTATCCCTCTTTGG
AAATTAACAATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACTCTCTGTACAAATAT
CAATTCCTCCTCAAGTTGATCAATCAAGACCTGAAGGTTTGAGATTCGATCGTTTACAACCTCC
GGAGCCAGAGTTTGGTCATGAAGATAGATTTGAGTTTGGTAAATTCGTAGCTAGAGAAGCTATG
CTTGATGAAGAATATTGGACTGCAGCTTGGCTTCGTGCAGAGAGTCACTGGGAAGATCGCTCCA
ATGAAAG

Genomic sequence GTCAAACTTTGCTTTCTGGTACGGCGGCGATGTCGACGATTTCGATCCATCGGACTGAGACTCT
ACGAATCACTCACGCTCGGTCACGAATCTTCCGGCAGAGATATCGGAGAACTATCCCTCTTTGG
AAATTAACAATCAATTCGAGATCTTCTGATACATCTAAGAAGGAAGAACTCTCTGTACAAATAT
CAATTCCTCCTCAAGTTGATCAATCAAGACCTGAAGGTTTGAGATTCGATCGTTTACAACCTCC
GGAGCCAGAGTTTGGTCATGAAGATAGATTTGAGTTTGGTAAATTCGTAGCTAGAGAAGCTATG
CTTGATGAAGAATATTGGGTAATGTCACTCAAATTCTTGACCTAACAATCAATTTTCGTTTATG
GCTGATTGATTTTGTGTTGGTTCGAGTTTGTGTTAGACTGCAGCTTGGCTTCGTGCAGAGAGTC
ACTGGGAAGATCGCTCCAATGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.269058438
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017