Detail information of Os09g0532700_circ_g.2


General Information
CircRNA Name Os09g0532700_circ_g.2
ID in PlantcircBase osa_circ_039973
Alias NA
Organism Oryza sativa
Position chr9: 20902447-20902560  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene Os09g0532700
Parent gene annotation Rossmann-like alpha/beta/alpha sandwich fold domain containing p
rotein. (Os09t0532700-01)
Parent gene strand +
Alternative splicing Os09g0532700_circ_ag.1 Os09g0532700_circ_ag.2 Os09g0532700_circ_ag.3 Os09g0532700_circ_g.1 Os09g0532700_circ_g.3
Support reads 1
Tissues seed
Exon boundary   No-Yes
Splicing signals   GT-TT
Number of exons covered Os09t0532700-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCATTCCTCTCAACTTTTTATTTGATTCTTTTGGTGGAAAAATCTTAATTGTTCAGcagtcat
atgatcctggcgcagcaaccgttattgagagcatattcagtttcaatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGTCATATGATCCTGGCGCAGCAACCGTTATTGAGAGCATATTCAGTTTCAATCTTTCCATTC
CTCTCAACTTTTTATTTGATTCTTTTGGTGGAAAAATCTTAATTGTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.209794152
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017