Detail information of orai.006G006400_circ_g.1


General Information
CircRNA Name orai.006G006400_circ_g.1
ID in PlantcircBase gra_circ_000552
Alias Chr06:1266254|1269846
Organism Gossypium raimondii
Position chrChr06: 1266254-1269846  JBrowse»
Reference genome Graimondii_221
Type   ue-circRNA
Identification method CIRI
Parent gene Gorai.006G006400
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 6/21
Tissues leaf/ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.006G006400.4:6
Gorai.006G006400.1:6
Gorai.006G006400.5:6
Gorai.006G006400.6:5
Gorai.006G006400.2:6
Gorai.006G006400.3:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTCTGCAACAACTTTCTCCAACTCTCTCATTGCCCTTTCAAGCATTATTCCTTTTGTCCTCAA
ATTAGAAACATCTTTTGACTGCAAAGAGTGACTTTTctcgacatataactttctgatttgcgga
cctttgtcttcatctatcccctacaaccattaataacgtaaagaacttagtgacctaataaaat
tatttata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 591
Transcript exons: 1266254-1266301,1266390-1266530,1266957-1267061,1269331-
1269417,1269535-1269644,1269747-1269846
CTCGACATATAACTTTCTGATTTGCGGACCTTTGTCTTCATCTATCCCCTGAGTGTACAAGTCA
TAAAGATCACAAATTTTATCCTCAATGACGTTATCCATGCTGTATTGTTTTTTAAGGGCTACTT
TTTCTTCATAACCAACCACTTCTTGTATGTCACAAGTTGGTACATCTCCTAGCATAGATGCCTG
CGATTTGATCATTTCAATGACCTCCAATTTGATCTGTTCAAATCTAGAAGCTTTTTCTTGCTTT
GCCGAGAGTCCCATTAAAATCATCTCTTTTAAGTTCCTCTTCAATGTTCTCAATTGCACCGAAT
GTCCGAGAATATTCATAAGGTTGTTAATTAACTCCTTGGATATTTTCCCTTGGCTTGAGCGTGC
TAGTCTAGCAACTTTAGCAAGCTTCTGCTTCACTTCACAAGGCAACCTTCTTTTGATAGTGGTA
GATGAAGCATCAATATCCTGAACTTCCATAGTTGATAGTCTTGATTCTGCAACAACTTTCTCCA
ACTCTCTCATTGCCCTTTCAAGCATTATTCCTTTTGTCCTCAAATTAGAAACATCTTTTGACTG
CAAAGAGTGACTTTT

Genomic sequence CTCGACATATAACTTTCTGATTTGCGGACCTTTGTCTTCATCTATCCCCTACAACCATTAATAA
CGTAAAGAACTTAGTGACCTAATAAAATTATTTATAATACAGAGAACATGAATAGTTAGTTGAT
AAAAGCACCTGAGTGTACAAGTCATAAAGATCACAAATTTTATCCTCAATGACGTTATCCATGC
TGTATTGTTTTTTAAGGGCTACTTTTTCTTCATAACCAACCACTTCTTGTATGTCACAAGTTGG
TACATCTCCTAGCATAGATGCCTGGGAAGCAATGCAGTTAATAAGCAAAGAACTAAAATATTAT
CATCACTTTCCACCGAATATGCACATATACTAAATAATATATTAGCATGAGAATGCATTTCTAA
CATAAGTGACAAGATAACAATTTGCAACCATAAATGTTTGTATCACATTATTCTCACAACATAA
GATGGAGATCAAAGTTCCAGCCTATATGTTGGTATAAGTGTTGTTTCTTATGAGAAAGAAAAAT
GTATGATGCTGGTGATCAAAGTGATAGTATCCATATCTTTCATGATATAAAATACCAATGAAGA
TAGAAAGAGGCCAAAAGTTATTGAAACACCAATATGGAACCAAGAAATCAAAAAGAGAACTTCT
ATTGAAAGAAATTAAGCACCTAGAACTAATTTGCATATTGCTCAAAGTGATTTTCGAGGAAACC
TGCGATTTGATCATTTCAATGACCTCCAATTTGATCTGTTCAAATCTAGAAGCTTTTTCTTGCT
TTGCCGAGAGTCCCATTAAAATCATCTCTTTTAAGTTCCTCTGAATCCAAACAATCGATTGAGG
CAGGGGCAAAAAGAAGGTTAGTATGCAAGTACATAATTAAAACATAATGAACCTAGTTATGAAC
ATGCAACCATCTTAATTGTTAGACAGAGAGAGAACACGGTTTATACCTAAAACCTTGCAGTATA
TAAGTTTTTCTAATCGGCAAAAGTTAAAAGTCGACATAATTATGTATATAGTGTTATAAAGATC
AAACATTATTACAAATCATAAAACTCTAGCTATAAGTTCTCCCACTTCCATCACCAAGAAGAAT
TTATACATGGCAATGTAACACTTTCCTAGTTCTTGAAATGACACACTAATATATCATTTCTTTT
TCATTGAAGGAAACATTATTGAAGAAAACATAAGAGAAGCTACAGCATAGGAAAAAGAATTACA
AGATGTGGATACTGACATGACAATGAATGTGTACTGCATCATACATACAAAAGAGAACTCCATG
CATTTCGTTTACAGCTTGGATACAAGTAATTCAAACTTTTATTTCAAGACTCTAGAAGATTCTA
GTGGGAGTCTTCTGCCATATGCAAATCTATTTATTTACCATGATATCTATATCAAAACCCTCAA
AATAGAAACAAATATGTATACCTATTATATATATGGATATCATGAACAATAAGCACTAAAAAGC
CTTAATATGTGTTTACACACAAGCACGCATACATATGCATATCTATATAAAAAATGCAGTGGAA
AATTTTTATTATCATAACTTCCTTATTTGGTATTATTATCATGGAAATATGTGCTATTGGATTG
CATATAAATCAAATTAATCTAGCCCAAACCTTTATAGGCCAGCAGATTGTACCCAATAAATTCT
AAACTTTCCAAATAAAAGCCCAATTAACCAAACTTGGTGTTCAACCCTAGTACCTAGTTTCTCC
CTTTTTACAATGAAATAGACAGCAGCGGCCATACACCTGTGTACCTTTTATTGCATTATCTTTC
AACCCAATATTTAACTTTCTAATATGGGTTTCATCTACATAGATTGAGGGTTAGTTCTTCATTG
CTGTTGCGGTTGAAAAGTGCTTTTCAAAAGTGTTTTTCAAGAGTGGTAGAAAAGTGTTGTAGAA
AAGTGTAGTTTATTAATTTTTAGTGCTCTCCATTGCTACCAAAAATTGTGATGGAAGGTTAAAA
TGTCCTTTTCAAACATGATAGTAGAAAGTAAAAAATTTGTTAAGTTATATGGTATTTAAATAAT
TTAATATAATGATACATGAAATATAAAGTTTAAATACTTTTTAAGTAATTAATATAAATTATTT
CTAAAACTAATGGTATATAAAATACTTTAAAAAATTAAATATAATAATAAATAAGATTTAAATA
ATTTAATATAATTTAATATAAAATATAAAATAATCTAATTTTTTATATACTTTTTAAATAGTTA
ATATAAATAAAGATATTTTTATAAGTTTCACTTTCAAACGCAAAAGCCAAAAGCACCTAAATTC
CAGCTTTTTGGTTGAAAATACACTTTTTGACTTCACTTTTGACTCCAAAAGCTAATTATTCTTC
ATTTCTTCTACGGTGGAGAAGCACTTTTAGCTTGAAAGTGCTTTTCCACCGGAGAATGCACCAT
AAGATGAGTCAAGGCCAAAGCCTGATACGGCATTATAAGCATTTTTTCCCACTCCTTTACATCT
TATTATTGGATACTTCGTTTTAGCAACATCTTCCCAAGATGCAATGCATACCAGAAACAGATGT
GAGAGGAAGCAATGCCCATGCTTCATGGAAAAGAACTCAATTAATGCATGCCTTTTCTGTGCCT
TTTGCCTTTCAAGGCAAACGCTTATCAACAAAAAGCAAGCTGCCCTAGAAAAGACCTCTAGTCT
AGAGGGGTTTAAAGTTCTTTTCCTCTATTGCACTGCATCTTAGAACCTAGGCACACGGTTTGAC
TTCACAACTAATTTTAAATTATTTCCTCATGTAAAGAATGAATAAATAATGTAACACAAAAAGA
AATTTAAGGGAAAATATACTAGCAAATCATAATGCAAGTGCATAAACACAAACAAAAATACATT
TATATAAAAATAATAGGTCTATAATCAAATACATGCATCCCAATCATGCTCATATGGCCTTAAG
GCACCATAGTCAAATTTGATTAAATTTTACTTCTATCAAATGTTATGCACTAGGCTAATAGGTT
TTACTGTCCAGATTTTGATGCAGTGGGCTCCTGTTCACTAATTCCAAATTTGTGTGACTAAGCT
CATACCTTCAATGTTCTCAATTGCACCGAATGTCCGAGAATATTCATAAGGTTGTTAATTAACT
CCTTGGATATTTTCCCTTGGCTTGAGCGCTGAAATTACCATAGAATATGATTTAGAACGTAATC
ATAGCTTTTAGCAAGAAGTGAAACCCTTCCTCGTCAAAGGAGCTAAAGAATAGTTGAACGGATG
ATATATTTTATTCTTACTGCTAGTCTAGCAACTTTAGCAAGCTTCTGCTTCACTTCACAAGGCA
ACCTTCTTTTGATAGTGGTAGATGAAGCATCAATATCCTGAACTTCCATAGTTGATAGTCTTGC
TGTTACAAATATTGAGTAGACAGTAGCAAGTTATAGAGAACACATCTTAAACTTCTTTGTAAGC
AAGAAATTGAACATACAAAAGTAACCACACAACTCACATTCTGCAACAACTTTCTCCAACTCTC
TCATTGCCCTTTCAAGCATTATTCCTTTTGTCCTCAAATTAGAAACATCTTTTGACTGCAAAGA
GTGACTTTT
Conservation Information
Conserved circRNAs gar_circ_000273 ghi_circ_000124*
PMCS 0.427580678
Functional Information
Coding potential Y
Potential coding position 1266295-1269809(-)
1266525-1266520(-)
Potential amino acid sequence MKTKVRKSESYMSRKVTLCSQKMFLI*(-)
MLGDVPTCDIQEVVGYEEKVALKKQYSMDNVIEDKICDLYDLYTQGIDEDKGPQIRKLYVEKSH
SLQSKDVSNLRTKGIMLERAMRELEKVVAESRLSTMEVQDIDASSTTIKRRLPCEVKQKLAKVA
RLARSSQGKISKELINNLMNILGHSVQLRTLKRNLKEMILMGLSAKQEKASRFEQIKLEVIEMI
KSQVSSKITLSNMQISSRHLC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b