Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0158500_circ_g.1 |
ID in PlantcircBase | osa_circ_008522 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 2836345-2836940 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os11g0158500 |
Parent gene annotation |
Basic helix-loop-helix dimerisation region bHLH domain containin g protein. (Os11t0158500-01) |
Parent gene strand | + |
Alternative splicing | NA |
Support reads | 1 |
Tissues | shoot, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os11t0158500-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009261 |
PMCS | 0.475520596 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2836385-2836937(+) 2836415-2836886(-) 2836387-2836638(-) |
Potential amino acid sequence |
MLFLQSVTKHADKLKDSTESKILGNENGPVWKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQ MLVEMICEDRGIFLEIADFIKGLGLTILRGAMEARKSKIWARFTVECSIDALLEKTVKHMLFLQ SVTKHADKLKDSTESKILGNENGPVWKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQMLVEM ICEDRGIFLEIADFIKGLGLTILRGAMEARKSKIWARFTVECSIDALLEKTVKHMLFLQSVTKH ADKLKDSTESKILGNENGPVWKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQMLVEMICEDR GIFLEIADFIKGLGLTILRGAMEARKSKIWARFTVECSIDALLEKTVKHMLFLQSVTKHADKLK DSTESKILGNENGPVWKDYFEGGATWAFDVGSQSMTCPIIVEDLDRPRQMLVEMICEDRGIFLE IADFIKGLGLTILRGAMEARKSKIWARFTVE(+) MLRHTLQEKHVLNCLLQQGIDATLNSKPCPNFTFTGFHCTS*(-) MCLTVFSSKASMLHSTVNRAQILLLRASIAPLRMVNPSPLMKSAISKNMPLSSQIISTSIWRGR SRSSTMIGHVID*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |