Detail information of BGIOSGA016580_circ_igg.1


General Information
CircRNA Name BGIOSGA016580_circ_igg.1
ID in PlantcircBase osi_circ_014443
Alias Chr04:23811481_23814441(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr4: 21726578-21729534  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016580_circ_g.1 BGIOSGA016580_circ_g.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTCTACATAGCCAATGGCGGAATTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCG
TGTGCTGTTCTTCAGAAGGCATTTCCTGATCATGAGggtttagggaggaggaggaggagaggtg
gttcatcaggtagaagaggaggaggatggcgaaggcgacgacgatggaggggcgcccggcgaag
atggggtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTAGGGAGGAGGAGGAGGAGAGGTGGTTCATCAGGTAGAAGAGGAGGAGGATGGCGAAGGC
GACGACGATGGAGGGGCGCCCGGCGAAGATGGGGTTCCGGATGCCGGCGGAGTGGGAGCCGCAC
GAGCAGTGCTGGATGGGCTGGCCTGTACGTACTTCTCCCTCATCTCTCTCCCTCTGGTTCCTCA
TCTTTTTTTTTTCTGTTTAATTGTTCTTCGCTTCTCCGTTTGGATTCTGAATTCCGATGGATCC
ATCCTCGCGATTTTTATCGCCAACCAAAAAAAAAAAAGAAAGAAGAAACAAGTAAATCCTACCG
CGTCATGTAGAATTTGGTTTCCTCCCAAGTGAATGGATTTGATGGATGGCCGCGCGCCGCGGTC
TCGGGATCAATCCATCCCATCTAAAGTGCACAGAGCAATTTGGGGTATTGTTTATTTCTCGTCA
AGTTGGAATCTCTGAATCGGTACTAGCTTACGAGCATATTTTAGGCTGGATTCTATCACCGCCT
CACCGGAACATCCACAACTTTATTACTCTTGATTTGTAAGCACATGGATTACTTTTTAAGTAGG
CGGCTACATTGGTTGTCCAAACGACAGTATCATTTTTGTCTTAAACTATTCAAGAATGATTTTT
TTTCATTTTTTTAGTACAAATGAATGAATCATTTCCCCTCACGCATAAATAAAGTTGTAATTTT
GGGACCATCACGCTATTAAAGCTCTACTGTTCCCTATCCCTGATTGACTCAATCTATAAGTCAT
GACCATCATTTTCTTTGCTGTCTGATTTTTCTGATGTACGATTCTAGAGATATTTACCTGTCTT
GTCTTGGTTCACGTTGCTGTGGCACATTGCTTAAACACTGGCACATTGACATTTTCTACATATA
TGTATTTTATAATCATGAATGATCGTTTGATCATTGCAGTGACATCTGTGGACTACTCTACCCT
GTACATGCCCTATTTTGTCTTGTCTAATCGCTGTTTAGTATATGTAACTCTGAAAGGGAGTGGT
TAGGTGGAATATCCACTTGACAATATCAATAATTGTCATTTTGGACTGTGGTCTTGAATATGAA
AAGCAGACTGTATCCATTTCATCTATCTTCTTCCCCAATCCTTGTTCTATACTACAGTGAGCAT
TTGGTTAACAGTGAGCATTGTTCTTTTTACTTTGAATCCCAGGAGCGTCGAGACAATTGGCGAG
AGCTTGCTGGTCCAGCTCGAAAAGTATTTGCAAGAACTGCTATTGCCATTTCAAAGTTTGAGTC
TGTTACTATATGTGCAAGTGCCAAGCAGGTAACAGATTTTCTCCACATTGCCTCCTATGATCTG
TGTTGTGAATTGTTGCACGATCATGTCTGATTGCACAGTGGTACCAATTCATACTTTTGTTTCA
TTCAGTATCCCTATGTCCATGAGCTAATGCTACATCAACCAAACATCAGGGTGGTCGAGATGAG
CATGAATGATTGCTGGTTCCGTGATATTGGTCCCACTGTATGCTACTTCAAGCCTTCTTATTCC
AAATTTGCTCTCCAGTGTTTGGGTTGCTAACAGTATCCCTGTTTTTTAGTTTATTGTTCGTAAA
GGTGCACCAGGGTTAGGAATCACAGAAAAAAATATAGCAGGAATTGATTGGGAATTTAACGCCT
GGGGAGGTATGTTGTTCTTATATTGAGTAATATGTTTATTCAGTTCTTTCTCATGCTATTTATT
TCAATTAGATTGTTTGTGTGATGAAACATTTTTCTTCACAAATTAAATCTTTGTGCTAGTGTCT
GTTATTAACAGTGTGAAAAGCGTACATTATCAAGACATGCTAGTTTCTTTGCACCTGCTCCGTA
TGAAGATTCAGTGAATTGTGCTGCTAATGCCTGCAGGAGCCACTGATGGTTGCTATGTTGATTG
GAGCCTTGACAGCTATGTTGCCAAGAAAGTAAGAAGAGAATAACCTTCTTAAAGAAAATTTGAC
ATCTTTCAAGGTCAAAAAGATCTTTTGCTAGTCTCCATCTGGTCTGAGAACTAGTTCTGTTTTG
GACATTGATTTCAGATAGTTGAGATTGAGAGGATCCCTAGATTTCCACACACGATGGTTCTTGA
AGGTGGAAGCATTCATGTAGATGGAGAAGGTTGTTCATGTGTTGAATCTTTGCTGACAAGCATA
TAGTTTCAGTATATTTGTTGGTATCTTGCTAATGAATTGCCATATTCCAACAGGTACATGCATC
ACAACAGAAGAATGCTTGTTGAATCCTAACAGAAACCCCAACATGACCAAACTAGAGATAGAGA
ATGAGCTGAAGGATTTTCTTGGAGTCGCAAAGGTCATCTGGATACCTCATGGGCTTTATGGTAA
CCACCAAAAACATTCTGTCACATAAAGGTGTAAAACCATAATAGTTCTGTTCCCTGCTTCTTCA
ACCATTCTACTGATAAATAGGCCTGCAATGGTTTCTCTAGGTGATGATGATACAAATGGTCATG
TTGACAATCTATGCTGCTTCATTAAACCTGGGGTGGTCCTCTTGTCATGGACCGATGATGAGAA
CGACCCACAGTACCAAAGGTCCGTTGATGCACTCTCAACTCTCTCCAAGTCCGTTGATGCGAAA
GGACGGCAGATAGAAGTTGTGAAAATCCACGTCCCAGGGCCTCTGTACATGACAAAGGAAGAGT
CAGAGGGTGTTGTAAAAACAGTCAGTATTTCTGTCATATTCATTACTAACTTCAATCCATTGAA
AATGAGCGTGTTCATCCCTTTCTAAGAATGAATAGTCCTTTTTTTTTTCTAGGAGCATGCTATA
CCGAGGGAACCAGGCACGAGATTGGCTGCCTCATACGTAAACTTCTACATAGCCAATGGCGGAA
TTGTAGCACCAGCTTTTGGCGACAAGTGGGACGAAGAAGCGTGTGCTGTTCTTCAGAAGGCATT
TCCTGATCATGAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021