Detail information of AT3G02450_circ_g.1


General Information
CircRNA Name AT3G02450_circ_g.1
ID in PlantcircBase ath_circ_019294
Alias Ath_circ_FC1779
Organism Arabidpsis thaliana
Position chr3: 503584-503904  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT3G02450
Parent gene annotation Probable inactive ATP-dependent zinc metalloprotease FTSHI 3, ch
loroplastic
Parent gene strand -
Alternative splicing AT3G02450_circ_g.2
Support reads 17
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered AT3G02450.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAAGGTTTTACCGGTCCCTGGTGGACCGACCAAAAGCACACCTCTCGGTAATCTTGCTCCTA
GTTTTTTGTAGTTTATACTTCCTTGAAGACATGAGAcctggtttaacgtctggtcacgttcatc
gttgaaactcctaccgcgttttcctccaaccgcatcaagctcatcaatgaatataatggaaggt
gagttttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGGTTTAACGTCTGGTCACGTTCATCGTTGAAACTCCTACCGCGTTTTCCTCCAACCGCATC
AAGCTCATCAATGAATATAATGGAAGGTGAGTTTTTCCTTGCTGCATTGAAAAGATCTCTGATT
CGCGCTGCGCCTCTTCCAACAAACAATTCAACAAACTCACTAGCGGAGACAGAGAAAAATGGAA
CTCCCGCTTCTCCAGCTACAGCCCGAGCCAACAAGGTTTTACCGGTCCCTGGTGGACCGACCAA
AAGCACACCTCTCGGTAATCTTGCTCCTAGTTTTTTGTAGTTTATACTTCCTTGAAGACATGAG
A
Conservation Information
Conserved circRNAs NA
PMCS 0.31167944
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a