Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d044979_circ_g.2 |
ID in PlantcircBase | zma_circ_009840 |
Alias | zma_circ_0003256 |
Organism | Zea mays |
Position | chr9: 9107435-9108864 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d044979 |
Parent gene annotation |
Putative DUF1296 domain containing family protein |
Parent gene strand | + |
Alternative splicing | Zm00001d044979_circ_g.1 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d044979_T013:2 Zm00001d044979_T005:2 Zm00001d044979_T016:2 Zm00001d044979_T009:2 Zm00001d044979_T014:2 Zm00001d044979_T017:1 Zm00001d044979_T008:2 Zm00001d044979_T015:2 Zm00001d044979_T012:2 Zm00001d044979_T002:2 Zm00001d044979_T010:2 Zm00001d044979_T007:2 Zm00001d044979_T001:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.102786742 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
9107537-9108861(+) 9107483-9108734(-) |
Potential amino acid sequence |
MSDRSTLVQSGRNRSPATTSGDQITHQNAMQNSNSDTTQGKRDAQGTTEKHVKPYLKNPQNEQH FPGSDPAHGSANVRIAGGTVGPAQRHVGVVNSTRQFAARSGSQMHAPSGSYANIQRGSFTSVGA SGRYSAFMSRNIQQNQRPDTMFRGRPTVRSFVAQNTNRYHQGSTSNQKGPTREFRVVRDNRFQH GVVENRPELGHKGSANVQMSDRSTLVQSGRNRSPATTSGDQITHQNAMQNSNSDTTQGKRDAQG TTEKHVKPYLKNPQNEQHFPGSDPAHGSANVRIAGGTVGPAQRHVGVVNSTRQFAARSGSQMHA PSGSYANIQRGSFTSVGASGRYSAFMSRNIQQNQRPDTMFRGRPTVRSFVAQNTNRYHQGSTSN QKGPTREFRVVRDNRFQHGVVENRPELGHKGSANVQMSDRSTLVQSGRNRSPATTSGDQITHQN AMQNSNSDTTQGKRDAQGTTEKHVKPYLKNPQNEQHFPGSDPAHGSANVRIAGGTVGPAQRHVG VVNSTRQFAARSGSQMHAPSGSYANIQRGSFTSVGASGRYSAFMSRNIQQNQRPDTMFRGRPTV RSFVAQNTNRYHQGSTSNQKGPTREFRVVRDNRFQHGVVENRPELGHKGSANVQMSDRSTLVQS GRNRSPATTSGDQITHQNAMQNSNSDTTQGKRDAQGTTEKHVKPYLKNPQNEQHFPGSDPAHGS ANVRIAGGTVGPAQRHVGVVNSTRQFAARSGSQMHAPSGSYANIQRGSFTSVGASGRYSAFMSR NIQQNQRPDTMFRGRPTVRSFVAQNTNRYHQGSTSNQK(+) MLKSVVPHNPKFTSRAFLVASRTLVISVGVLCNKRSNSGPSTKHCIRSLVLLNVSRHES*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |