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circRNA ID
AT1G01710_circ_g.3
Alias
ath_circ_000111, 1:263645-264160
Organism
Arabidpsis thaliana
Position
chr1: 263645-264160  JBrowse»
Reference genome
TAIR10.38
Type  
e-circRNA
Identification method
find_circ; CIRI2
Parent gene
Parent gene annotation
Acyl-CoA thioesterase II
Parent gene strand
+
Alternative splicing
Splice junction sequence  
AACATTTTACAGGCTCTTGCTGCGGCGTCAAAAACTGTTGATTTTCTCAAGGTCGTCCACAGTT
TACACTCCTATTTTCTTCTCGTTGGAGATATTGACActtacgtgtttggtgttgccgcgtgatc
actgtcatttgcttgagactaattccatctggcaatcggatacgtcacttgacaaatgctcttt
agtggaac
Support reads
1/1/1
Tissues
seedling;root;flower
Exon boundary  
Yes-Yes
Splicing signals  
GT-AG
Sanger sequencing for BSS  
NA
PCR primers for BSS  
NA
Assembled circRNA sequence  
NA
Sanger sequencing for FL  
NA
PCR primers for FL  
NA
Genomic sequence
CTTACGTGTTTGGTGTTGCCGCGTGATCACTGTCATTTGCTTGAGACTAATTCCATCTGGCAAT
CGGATACGTCACTTGACAAATGCTCTTTAGTGGAACGCATTTTGCAACTCGACCCTTTAGAAGT
ACGTACGGACGGTGTTCTTCTTTATCACATTTCTTTCTGCTTCTGGCAACTGAATCTCTTTTTC
TCTGTGCTTCTTTCTTCTAGTTGAATATCTTCAGGGGGATCACACTACCTGATGCTCCTATATT
TGGAAAGGTTTTTGGAGGACAATTTGTCGGACAGGTATCGCATTTTCTCTAGGAAGGTTACATT
ATTATGTCTCTGTAAACCTTGCTGATCTGATTCATGTGCATATATATATTGCTTGTTAACAGTG
ATAACCGTAACCACTACTAAGTCACTTTTACCAACATTTTACAGGCTCTTGCTGCGGCGTCAAA
AACTGTTGATTTTCTCAAGGTCGTCCACAGTTTACACTCCTATTTTCTTCTCGTTGGAGATATT
GACA
Number of exons covered
AT1G01710.1:3
Conserved circRNAs
NA
Coding potential
NA
Potential coding position
NA
Potential amino acid sequence
NA
Sponge-miRNAs
NA
circRNA-miRNA-mRNA network
References
Philips et al., 2020

Copyright©2017-2021 Institute of Crop Sciences / Institute of Bioinformatics, Zhejiang University.
Any questions or suggestions, please contact the Fan's lab, bioinplant@zju.edu.cn
For submittion, please click here. Last modified at 2021-03-09.

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