Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G09910_circ_g.4 |
ID in PlantcircBase | ath_circ_001767 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 3222912-3223031 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | PcircRNA_finder |
Parent gene | AT1G09910 |
Parent gene annotation |
Rhamnogalacturonate lyase family protein |
Parent gene strand | - |
Alternative splicing | AT1G09910_circ_g.2 AT1G09910_circ_g.3 AT1G09910_circ_g.5 |
Support reads | 1 |
Tissues | aerial |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G09910.2:1 AT1G09910.1:1 AT1G09910.3:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.159725 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
3222933-3223028(+) |
Potential amino acid sequence |
MYLPSRDGSHVLRNEISTCSSVSTMTLKVTPLMLLSIFKGMYLPSRDGSHVLRNEISTCSSVST MTLKVTPLMLLSIFKGMYLPSRDGSHVLRNEISTCSSVSTMTLKVTPLMLLSIFKGMYLPSRDG SHVLRNEISTCSSVSTMTLKVTPLM(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |