Detail information of AT2G03280_circ_g.2


General Information
CircRNA Name AT2G03280_circ_g.2
ID in PlantcircBase ath_circ_012669
Alias 2:996769-996973
Organism Arabidpsis thaliana
Position chr2: 996769-996973  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G03280
Parent gene annotation protein_coding
Parent gene strand -
Alternative splicing AT2G03280_circ_g.1
Support reads 1/1
Tissues seedling;flower
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G03280.1:1
AT2G03280.2:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGAACCAAAACCGCCTCCTCCGGTGTCAAAGGACACAGTCCTTGCACTCTCCTTTCTTCTGAA
ACTATCTCTTTCTCTCTCCACCATGGATATGCATACaattcgtggaaatgattcctttagaagg
gctaatctctttgcaccaccaaaaatctcaccagctgcaatgtatatctgtgtatccttttgaa
accccaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 205
Transcript exons: 996769-996973
AATTCGTGGAAATGATTCCTTTAGAAGGGCTAATCTCTTTGCACCACCAAAAATCTCACCAGCT
GCAATGTATATCTGTGTATCCTTTTGAAACCCCAATGCTTTAAGAACCAAAACCGCCTCCTCCG
GTGTCAAAGGACACAGTCCTTGCACTCTCCTTTCTTCTGAAACTATCTCTTTCTCTCTCCACCA
TGGATATGCATAC

Genomic sequence AATTCGTGGAAATGATTCCTTTAGAAGGGCTAATCTCTTTGCACCACCAAAAATCTCACCAGCT
GCAATGTATATCTGTGTATCCTTTTGAAACCCCAATGCTTTAAGAACCAAAACCGCCTCCTCCG
GTGTCAAAGGACACAGTCCTTGCACTCTCCTTTCTTCTGAAACTATCTCTTTCTCTCTCCACCA
TGGATATGCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.494233447
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020