Plant Circular RNA Database

Detail information of 1_circ_ig.7

			
						 General Information
					
						CircRNA Name
						1_circ_ig.7
					
						ID in PlantcircBase
						ath_circ_006209
					
						Alias
						AtciR6
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr1: 17582831-17584833  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ig-circRNA							
									
						Identification method
						CIRI, circRNA_finder, find_circ, CIRI-full, CIRI2
					
						Parent gene
						
							NA						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						NA
					
						Alternative splicing
						
							1_circ_ig.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_igg.8 1_circ_igg.9 						
					
						Support reads
						14
					
						Tissues
						root, aerial, inflorescences, whole_plant, leaf
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						NA

General Information
CircRNA Name	1_circ_ig.7
ID in PlantcircBase	ath_circ_006209
Alias	AtciR6
Organism	Arabidpsis thaliana
Position	chr1: 17582831-17584833 JBrowse»
Reference genome	TAIR10.38
Type	ig-circRNA
Identification method	CIRI, circRNA_finder, find_circ, CIRI-full, CIRI2
Parent gene	NA
Parent gene annotation	NA
Parent gene strand	NA
Alternative splicing	1_circ_ig.3 1_circ_ig.4 1_circ_ig.5 1_circ_ig.6 1_circ_igg.8 1_circ_igg.9
Support reads	14
Tissues	root, aerial, inflorescences, whole_plant, leaf
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	NA

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GTTCAATAGCCAAGAGAAAATGAGGGGTTTTGTTAACTGCTTCATGGAGATATCTTTGAGGTCC
AAAGAACAAAAATTTCGAAGGTAAAACATGTGGGAGggatactctgtgatgattctaaatcgaa
ggaaaaaacactagagttttaaggtgaagtttctcgctttcttctcatctacttttgagttttg
attttgaa

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 454
Transcript exons: 17582831-17584833
GGATACTCTGTGATGATTCTAAATCGAAGGAAAAAACACTAGAGTTTTAAGCTGTGGACATTGT
GTCCTTGTCAAGATAAACAGAAACAGTAGGAGCCAAGCAGTGGGATCCCCACTTGGATTAGTGA
AATGGTTTTGTCTCAAGATGGAGGAGGACTCTTGAGGTGAAAAATAACTTGGGAAAGTGATTCA
GTCGCCTCGGTAAATGGAGGGTCAGCAATCACGTGGCAATTCATATCTCAATTAATTTGGAGAC
AGGAACATTGATTTGTATTCTTCGTTAACTCATTATCCGTCAAGATTAAAAGTAGAAAATATCA
GCAACCAGTCAGATTTTGGATCTGTGAAATTGTGGTTCAATAGCCAAGAGAAAATGAGGGGTTT
TGTTAACTGCTTCATGGAGATATCTTTGAGGTCCAAAGAACAAAAATTTCGAAGGTAAAACATG
TGGGAG
						
					

						Genomic sequence
						
							GGATACTCTGTGATGATTCTAAATCGAAGGAAAAAACACTAGAGTTTTAAGGTGAAGTTTCTCG
CTTTCTTCTCATCTACTTTTGAGTTTTGATTTTGAATATGTAACCAAGTTCATACAAGTTCACA
TAGGACAAAACCTGTTGTAAAAGCTGGTTTTTGTATATCATATGTTCAAGATTTAACCAAGTTT
TAACCTGTTATTAATATGTTCAATATTTCAGCTGTGGACATTGTGTCCTTGTCAAGATAAACAG
AAACAGTAGGAGCCAAGCAGTGGGATCCCCACTTGGATTAGTGAGTAAGATTTCCAGCAGTTTC
TTTATTAGCACTGTTTTATAGTCTTATTTAATAGTCGTATGTATTTAGTAACTGCTATAAGAAT
GGTTTTGTCTCAAGATGGAGGAGGACTCTTGAGGTGAAAAATAACTTGGGAAAGTGATTCAGTC
GCCTCGGTAAATGGAGGGTCAGGTAGACAAACTATCTTTGTCTCTTTTCAAAATTTTTGTAGTT
TTTCTATGGTCTTGTGTATGAAGTAAACTGCTAATACAATGGTTTTGTACCAACGAACAAAACT
TAAGAAAGCTATTCAGCCTCCGTGAAAGAAGAAGGGTCAGGTAGATAAATGTTCTTTCTGAAAA
TGTTTGATGTGTTTAAGTGATTATAACTTGTAGGAACTAATAAAACATATCATATTTCTGTTTT
AGATCTCGATTTTCAAGTACAATACAAACGAAGTCAGGGATCAGATTCTAGCTGTTGGAGAGTC
TTTCTCACATGGGACAACCAGATAGTTTCTCCGTGCTAAGGTGACTAATTTTCTTTATCCCCTC
TTACAAAACTTGACACTCTCTTGTTCTATATTATCTTTCTAACTTGAATGGTTGTGTTTTTTGG
TCAGGTTCTTCGATCCGTCAAAGATTGAATAACAAAAAAACAAAGAACTTAGTCAGGCTCTGTA
AGATTCTTACCATAATTTTTTAGCGATGATTTTGTAATTTTTTTTTATTGTTTGTATGCCGTGT
TAGCGTTCTGTTTGCTTTGCTAACAAAATGCTTTGAATACTAGATAGTGGAAATTTATTCTACA
AAGAACAAATTTCTTGCCAAGAGCAAATGAGAGGTCATGTATCTATCAGCTGCACATAGCAACA
TTTTCAGAGTCGATTTTCTAGCCAAGGGCATATGAGTGGTCAGGTAAAATAATTAGTTTCCTCT
CTTCTCTTGTGTATTCTCTCATACATTCGTCCCTACAGGTTATTTGCATTTGATGAGATACCTT
GGCTTGTTTACTCAAACTAATGTTTTTTATGGTATCGTTTTGGCTCTGTCTTGGAATTTAAGGA
AGCCATCATATTCGTATAATCTGGACTAATGGGTTTGGTTATTAGTCTATCACTATCTTTATAT
GTGTTTCTCTAGAGATTGATTTGGAAAAACTGGTGAATTGTTATATTCATACAAGAAGATTCTA
TGGCATCACATACATGGTTTATCTCGATATCCCGTGTTTCAATAATTGCATGTTTATGTTTCGA
GCTCTTATCAATCTTGTGGTCATATGATTCAGCAATCACGTGGCAATTCATATCTCAATTAATT
TGGAGACAGGAACATTGATGTAAGTTTTAAAACACTCTTTAAATTATATGTGTTCCTAAGATGA
TGCAGTGTCCTTAATGTGTTCTTAAAGTGAGATTGTTTTTCTAACTTTGATAGTTATGTTTTTC
AGTTGTATTCTTCGTTAACTCATTATCCGTCAAGATTAAAAGTAGAAAATATCAGCAACCAGTC
AGATTTTGGATCTGTAAGACTCTTACCATGTTTTTTTTTCTTTCTTGGCAATGATTTTGTGGTT
TCATTTTATTGTCCAATTTGTATGATGTACTTTCAGGTGAAATTGTGGTTCAATAGCCAAGAGA
AAATGAGGGGTTTTGTTAACTGCTTCATGGAGATATCTTTGAGGTCCAAAGAACAAAAATTTCG
AAGGTAAAACATGTGGGAG
						
					

			
		

Sequences
Splice junction sequence	GTTCAATAGCCAAGAGAAAATGAGGGGTTTTGTTAACTGCTTCATGGAGATATCTTTGAGGTCC AAAGAACAAAAATTTCGAAGGTAAAACATGTGGGAGggatactctgtgatgattctaaatcgaa ggaaaaaacactagagttttaaggtgaagtttctcgctttcttctcatctacttttgagttttg attttgaa
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 454 Transcript exons: 17582831-17584833 GGATACTCTGTGATGATTCTAAATCGAAGGAAAAAACACTAGAGTTTTAAGCTGTGGACATTGT GTCCTTGTCAAGATAAACAGAAACAGTAGGAGCCAAGCAGTGGGATCCCCACTTGGATTAGTGA AATGGTTTTGTCTCAAGATGGAGGAGGACTCTTGAGGTGAAAAATAACTTGGGAAAGTGATTCA GTCGCCTCGGTAAATGGAGGGTCAGCAATCACGTGGCAATTCATATCTCAATTAATTTGGAGAC AGGAACATTGATTTGTATTCTTCGTTAACTCATTATCCGTCAAGATTAAAAGTAGAAAATATCA GCAACCAGTCAGATTTTGGATCTGTGAAATTGTGGTTCAATAGCCAAGAGAAAATGAGGGGTTT TGTTAACTGCTTCATGGAGATATCTTTGAGGTCCAAAGAACAAAAATTTCGAAGGTAAAACATG TGGGAG
Genomic sequence	GGATACTCTGTGATGATTCTAAATCGAAGGAAAAAACACTAGAGTTTTAAGGTGAAGTTTCTCG CTTTCTTCTCATCTACTTTTGAGTTTTGATTTTGAATATGTAACCAAGTTCATACAAGTTCACA TAGGACAAAACCTGTTGTAAAAGCTGGTTTTTGTATATCATATGTTCAAGATTTAACCAAGTTT TAACCTGTTATTAATATGTTCAATATTTCAGCTGTGGACATTGTGTCCTTGTCAAGATAAACAG AAACAGTAGGAGCCAAGCAGTGGGATCCCCACTTGGATTAGTGAGTAAGATTTCCAGCAGTTTC TTTATTAGCACTGTTTTATAGTCTTATTTAATAGTCGTATGTATTTAGTAACTGCTATAAGAAT GGTTTTGTCTCAAGATGGAGGAGGACTCTTGAGGTGAAAAATAACTTGGGAAAGTGATTCAGTC GCCTCGGTAAATGGAGGGTCAGGTAGACAAACTATCTTTGTCTCTTTTCAAAATTTTTGTAGTT TTTCTATGGTCTTGTGTATGAAGTAAACTGCTAATACAATGGTTTTGTACCAACGAACAAAACT TAAGAAAGCTATTCAGCCTCCGTGAAAGAAGAAGGGTCAGGTAGATAAATGTTCTTTCTGAAAA TGTTTGATGTGTTTAAGTGATTATAACTTGTAGGAACTAATAAAACATATCATATTTCTGTTTT AGATCTCGATTTTCAAGTACAATACAAACGAAGTCAGGGATCAGATTCTAGCTGTTGGAGAGTC TTTCTCACATGGGACAACCAGATAGTTTCTCCGTGCTAAGGTGACTAATTTTCTTTATCCCCTC TTACAAAACTTGACACTCTCTTGTTCTATATTATCTTTCTAACTTGAATGGTTGTGTTTTTTGG TCAGGTTCTTCGATCCGTCAAAGATTGAATAACAAAAAAACAAAGAACTTAGTCAGGCTCTGTA AGATTCTTACCATAATTTTTTAGCGATGATTTTGTAATTTTTTTTTATTGTTTGTATGCCGTGT TAGCGTTCTGTTTGCTTTGCTAACAAAATGCTTTGAATACTAGATAGTGGAAATTTATTCTACA AAGAACAAATTTCTTGCCAAGAGCAAATGAGAGGTCATGTATCTATCAGCTGCACATAGCAACA TTTTCAGAGTCGATTTTCTAGCCAAGGGCATATGAGTGGTCAGGTAAAATAATTAGTTTCCTCT CTTCTCTTGTGTATTCTCTCATACATTCGTCCCTACAGGTTATTTGCATTTGATGAGATACCTT GGCTTGTTTACTCAAACTAATGTTTTTTATGGTATCGTTTTGGCTCTGTCTTGGAATTTAAGGA AGCCATCATATTCGTATAATCTGGACTAATGGGTTTGGTTATTAGTCTATCACTATCTTTATAT GTGTTTCTCTAGAGATTGATTTGGAAAAACTGGTGAATTGTTATATTCATACAAGAAGATTCTA TGGCATCACATACATGGTTTATCTCGATATCCCGTGTTTCAATAATTGCATGTTTATGTTTCGA GCTCTTATCAATCTTGTGGTCATATGATTCAGCAATCACGTGGCAATTCATATCTCAATTAATT TGGAGACAGGAACATTGATGTAAGTTTTAAAACACTCTTTAAATTATATGTGTTCCTAAGATGA TGCAGTGTCCTTAATGTGTTCTTAAAGTGAGATTGTTTTTCTAACTTTGATAGTTATGTTTTTC AGTTGTATTCTTCGTTAACTCATTATCCGTCAAGATTAAAAGTAGAAAATATCAGCAACCAGTC AGATTTTGGATCTGTAAGACTCTTACCATGTTTTTTTTTCTTTCTTGGCAATGATTTTGTGGTT TCATTTTATTGTCCAATTTGTATGATGTACTTTCAGGTGAAATTGTGGTTCAATAGCCAAGAGA AAATGAGGGGTTTTGTTAACTGCTTCATGGAGATATCTTTGAGGTCCAAAGAACAAAAATTTCG AAGGTAAAACATGTGGGAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.217276914

Conservation Information
Conserved circRNAs	NA
PMCS	0.217276914

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Chu et al., 2017;Zhang et al., 2019

circRNA

Detail information of 1_circ_ig.7

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