Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d044774_circ_g.2 |
ID in PlantcircBase | zma_circ_009833 |
Alias | Zm09circ00003, GRMZM2G110289_C1 |
Organism | Zea mays |
Position | chr9: 2063731-2064671 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d044774 |
Parent gene annotation |
RNI-like superfamily protein |
Parent gene strand | + |
Alternative splicing | Zm00001d044774_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d044774_T010:3 Zm00001d044774_T003:3 Zm00001d044774_T006:3 Zm00001d044774_T004:3 Zm00001d044774_T002:3 Zm00001d044774_T005:3 Zm00001d044774_T009:3 Zm00001d044774_T008:3 Zm00001d044774_T007:3 Zm00001d044774_T001:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.13205975 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
2063783-2064668(+) 2063747-2063985(-) 2063793-2064660(-) |
Potential amino acid sequence |
MSALSAHKGKITVVDIGNNNISPEGLHPVAEFLKRTKSLQWFSLYMNDISDEGAEKVAEALKDN KTISTIDLEIHLHGNGIGNEGIRELMSALSAHKGKITVVDIGNNNISPEGLHPVAEFLKRTKSL QWFSLYMNDISDEGAEKVAEALKDNKTISTIDLEIHLHGNGIGNEGIRELMSALSAHKGKITVV DIGNNNISPEGLHPVAEFLKRTKSLQWFSLYMNDISDEGAEKVAEALKDNKTISTIDLEIHLHG NGIGNEGIRELMSALSAHKGKITVVDIGNNNISPEGLHPVAEFLKRTKSLQWFSLYMNDISDEG AEKVAEALKDNKTISTIDL(+) MQVNFQVYGRNCFVIFQSLSNLFSSLITNIVHVETEPL*(-) MQTSTHVFPHSQSHYHASEFPSLW*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020;Zhang et al., 2019 |