Detail information of BGIOSGA026449_circ_g.3


General Information
CircRNA Name BGIOSGA026449_circ_g.3
ID in PlantcircBase osi_circ_007463
Alias 7:27656837|27659057
Organism Oryza sativa ssp. indica
Position chr7: 27656837-27659057  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA026449
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA026449-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTATTATTGCAGATATGGAAGTATCCCAAGTTATGGGTAGGATTCCTGAAGTGTGCTATC
TTGACGAAACCTCAGTCATATGGTGTGCTGCTGCAGgtcctccctgtttttcccagtattgtta
atcttcccttggataagtttcaagttgcactttctcgaatcctgcaggttagtttttgtctggc
atgaaata
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCCTCCCTGTTTTTCCCAGTATTGTTAATCTTCCCTTGGATAAGTTTCAAGTTGCACTTTCTC
GAATCCTGCAGGTTAGTTTTTGTCTGGCATGAAATATGTGCATGCTGTGTTAATTTTCTATCTG
ATCCTTAACTGTGATTTGTATTTGAGTATTAACTTAAGTTCATGTCCAAGCTGATCCTTTCGTT
GCACCTTTGACGTAAAAAAATAACAACTTTAATGTTTTATTAGTAAAACCTTGTTTCTACCCTC
TCCTTTTGGGGTTATATGTTTCACGTGAGTATTATATATTAGACTTCTGCAGTTGAATACAGAA
AGAAGCTTATGCAGTGCCACACCACCCCAAAAATTCACCTGTATTCAATGACCATCCAGTAGCT
TAGCTATCCTTCTTAGGCCAACTATGTTGTCAAAGTATGTAAAGTTGACTGGGGGGAGAAGATA
ATGCATGACTTTAACTGGTAACAAAGTGGATTAACTTTGGTCTTCTGTTAGTAGGGTACAGTTT
TCTTGTTGCAGTTATAAAGATTTGGGAGCTTTTATTTTTATCTAGAAAAATACTGGAAAGTTTA
CTCAAAGGCACTCACACACCGCAAGAATCCATCAGACCGTAACTGATCCATATTACATGCAAAC
ACTGATTGATCTTATTAGCTGCAAATTTGCAGCATTCAATAAGACAATAAGATATGATTCCACA
GCTCATCTATCATGTTTGATTTTTCCTTCATGTTTTTTCTTTTCATGATATGATTTCCTTTTCA
TTTAATTATTTTTCTCAAAGTAGGACAATGGTAATTGTTTTTTTTTACTGCCTGTAAAATGTAA
ATATTACAGTTTTACTTGTTGAAAATTTTATTTTTATGCCTGTTGCAAAGTGCAAGTTCAGTGT
ACTTGTTTGGTTTTGGTAAATTGATTCAGTTTAGTTTTAAGGGTTTCCCAGCTTGTGCGGGCTT
ATGATACATTATAACTTGCTGACTATTGCAGGGATCACCGCAGAATGGGCCTTCTCTTGATCCA
TCAGAAATTTTGATTGCGATTCATGTAATAGATCCTGAGAAAGAAGGAATACCACTCAAAAAGG
TCTGTTTCCAATATTTTTAAATAGATCATTTGGCGATTTAGTTTAATATACTGATAAATTTGGT
AATTCATTTTATCTTATGATAGGTTATTGATGCCTGTGCTGCTTGTTTTGAGCAAAGGACAATA
TTCACTCAACAAGTTTTGGCGAAAGCACTGAACCAACTGGTATATATGATCATATTTTTCGCCT
TTTCAGATGTACCTGCCTTGTGATATGATGTAGTTGTTGGGTCATTGCTCAAGCTCTACTTTTC
CTCAGGTTGAACAAATTCCACTTCCGTTGCTGTTTATGCGAACTGTTATGCAAGCAATCGGTGC
ATTTCCTGCATTGGTGAGTTAACTGCATGAACCCAATATTCTAACTGTGGCTGATAGTTTATTG
GTGTTATAATATATAGTTAACATCTGCTGATAGTACAACAAATCAAGTTGAAATGCCACGGTCA
TGCTGTTACATGATCTACCTGTGGTTCATGTTGAGTAGGCCACATTCCCTTTCCTGGTTTTGGT
GCTTGCGCCTGATTCAATTAGAAAGTGTCCATTCATGATTTTTCTTTAGTTGTATTTTACTGCC
ACTTAAGAAGCAAAGAGTTGATCACTTGTGTTTACTGTTTACAACTGCTTGCTTCATATCTGGT
GCGTGCACTTATCCACTTGATTCTATGAGAAAGCAGTTACATGGTAATATATGTCCTTTCCACT
CTCTCGAAGGTGATGGAGGATTGGGACCATCAAACTATCAAAGATATTCATGTGGAACTTCCTT
TATTACACAGTATTGGCATGATAACATATTGAAGTTGACGAGCATTGCAATTCTTTATTATGAA
AAATCTCTTGGGAGTTTTCGGTATTATTTCTCAATCTTATAGACCTGTTTCTTGTTCTTATAAT
CTGACGGTAAGCCTTCTTTTCAGGTGGACTTTGTGATGGATATCATGTCACGTCTTGTTAGCAA
GCAGGTTTTAATTTTTTTTTTAAGTTTAGTTTCAGTGGTTTTACATAATTTTGGATATGGAAAT
ATCATGTCATCTTTTATTATTGCAGATATGGAAGTATCCCAAGTTATGGGTAGGATTCCTGAAG
TGTGCTATCTTGACGAAACCTCAGTCATATGGTGTGCTGCTGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 27658217-27659054(+)
27659042-27657870(+)
27658977-27656862(+)
Potential amino acid sequence MRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPKLWVGFLKCAILTKPQSYGVLLQVLPVFPS
IVNLPLDKFQVALSRILQGSPQNGPSLDPSEILIAIHVIDPEKEGIPLKKVIDACAACFEQRTI
FTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPKLWVGFL
KCAILTKPQSYGVLLQVLPVFPSIVNLPLDKFQVALSRILQGSPQNGPSLDPSEILIAIHVIDP
EKEGIPLKKVIDACAACFEQRTIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGAFPALVDFV
MDIMSRLVSKQIWKYPKLWVGFLKCAILTKPQSYGVLLQVLPVFPSIVNLPLDKFQVALSRILQ
GSPQNGPSLDPSEILIAIHVIDPEKEGIPLKKVIDACAACFEQRTIFTQQVLAKALNQLVEQIP
LPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPKLWVGFLKCAILTKPQSYGVLLQ(+
)
MVCCCRSSLFFPVLLIFPWISFKLHFLESCRDHRRMGLLLIHQKF*(+)
MEVSQVMGRIPEVCYLDETSVIWCAAAGPPCFSQYC*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021