Plant Circular RNA Database

Detail information of AT3G44310_circ_g.2

			
						 General Information
					
						CircRNA Name
						AT3G44310_circ_g.2
					
						ID in PlantcircBase
						ath_circ_025991
					
						Alias
						At_ciR2848
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr3: 15987123-15988600  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							AT3G44310						
					
						Parent gene annotation
						
							Putative uncharacterized protein At3g44310 (Fragment)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G44310_circ_g.1 3_circ_ag.3 AT3G44310_circ_g.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G44310_circ_g.8 						
					
						Support reads
						3
					
						Tissues
						leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT3G44310.2:3
AT3G44310.3:3
AT3G44310.1:3
AT3G44310.4:3

General Information
CircRNA Name	AT3G44310_circ_g.2
ID in PlantcircBase	ath_circ_025991
Alias	At_ciR2848
Organism	Arabidpsis thaliana
Position	chr3: 15987123-15988600 JBrowse»
Reference genome	TAIR10.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	AT3G44310
Parent gene annotation	Putative uncharacterized protein At3g44310 (Fragment)
Parent gene strand	+
Alternative splicing	3_circ_ag.2 3_circ_ag.3 3_circ_ag.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G44310_circ_g.1 3_circ_ag.3 AT3G44310_circ_g.4 3_circ_ag.5 3_circ_ag.6 3_circ_ag.7 AT3G44310_circ_g.8
Support reads	3
Tissues	leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT3G44310.2:3 AT3G44310.3:3 AT3G44310.1:3 AT3G44310.4:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCTATTGTCTCCCAAGGTGGAAGTGTCATTATTTCACCTTTGGGACAAGTTCTCGCCGGACCAA
ACTTTGAATCAGAGGGTCTCGTCACAGCTGATATTGacaaagcggagaagtatattgtggaggc
ggcaagcaagggagcagagctagtgttgttcccggaggggtttatcggtggctatcctcgaggt
tttaggtt

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							ACAAAGCGGAGAAGTATATTGTGGAGGCGGCAAGCAAGGGAGCAGAGCTAGTGTTGTTCCCGGA
GGGGTTTATCGGTGGCTATCCTCGAGGTTTTAGGTTCGGTTTAGCGGTTGGCGTTCATAACGAA
GAAGGGCGTGATGAGTTTCGGAAGTACCATGCTTCTGCTATTCATGTTCCTGGTATTACTATTT
ACTTCCATTATTTGTATTCTTTTTATTATCATCTTATCTTGTATTTTATCCATAAAATGATTTT
TGATACATTTTTAACCAATCAATGACTTTGAACCATATCCTCAATTATTGCATGCTTATCCTAG
GCCGAGTGTATTCAAAGTATACACCACCCGATCTCGGATCCAAGCCTACCAAAAATTTGGATAT
GCGGATCTAGATGACAATATTTATCCTGATCTTTATCTTTTAAATGTATAAATTACTATATGTT
ACATTAAATTTTATAATTTTTACACCAAAAAATATAATATTAAATCTCTTTAATTAAAGATTTT
TTTTATTTCTCCTTTATTTGGTTGCTGGATTATGATTTTTAGTTGGCTATGGTTGGAGTCTTGG
TGATGTGTATAAGTTTTGGACAATTGAATTTTATTTGGAACAAAGTAAACTTAACTTTGAGGGA
AAATATGTTTGATTTCGAGTTCTCTTTTTTTTTGTCACGTTTAGATGAAATTTAATTGGAACAA
GCATCTAATTAATGAGTGTTCTTGCTCTAGTTTAAATTTAGTTGAGCACTCTCAATATCTTGGA
ACACAAAATGACTCTTTTTGGTTTTTGTGATGAATCTTCAGGCCCTGAAGTAGCAAGATTGGCT
GACGTGGCTAGGAAAAACCATGTGTACTTGGTAATGGGAGCCATAGAGAAGGAAGGGTATACCC
TCTATTGCACAGTTCTTTTCTTTAGTCCACAGGGTCAGTTCTTGGGCAAGCACCGTAAACTCAT
GCCCACAAGTTTGGAACGTTGCATTTGGGGCCAAGGGGACGGATCAACCATCCCCGTTTACGAC
ACTCCCATTGGAAAACTCGGTGCTGCTATTTGCTGGGAGAATAGGATGCCCCTCTACAGAACTG
CATTGTACGCCAAAGGTCAGCTTTTAATGCAATGCCGTTTGAAACATCTAGGCTTTTACAAAAA
AATCTTACAAAGTTTTTTTTTTATTTTTCGTTTTTGGTGTTTAGGCATTGAGCTTTATTGTGCA
CCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCACATTGCGATCGAAGGTGGAT
GTTTCGTCTTGTCGGCTTGCCAATTCTGCCAGCGTAAACATTTCCCTGATCATCCTGACTACTT
GTTTACCGATTGGTACGACGACAAAGAACATGATTCTATTGTCTCCCAAGGTGGAAGTGTCATT
ATTTCACCTTTGGGACAAGTTCTCGCCGGACCAAACTTTGAATCAGAGGGTCTCGTCACAGCTG
ATATTG
						
					

			
		

Sequences
Splice junction sequence	TCTATTGTCTCCCAAGGTGGAAGTGTCATTATTTCACCTTTGGGACAAGTTCTCGCCGGACCAA ACTTTGAATCAGAGGGTCTCGTCACAGCTGATATTGacaaagcggagaagtatattgtggaggc ggcaagcaagggagcagagctagtgttgttcccggaggggtttatcggtggctatcctcgaggt tttaggtt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	ACAAAGCGGAGAAGTATATTGTGGAGGCGGCAAGCAAGGGAGCAGAGCTAGTGTTGTTCCCGGA GGGGTTTATCGGTGGCTATCCTCGAGGTTTTAGGTTCGGTTTAGCGGTTGGCGTTCATAACGAA GAAGGGCGTGATGAGTTTCGGAAGTACCATGCTTCTGCTATTCATGTTCCTGGTATTACTATTT ACTTCCATTATTTGTATTCTTTTTATTATCATCTTATCTTGTATTTTATCCATAAAATGATTTT TGATACATTTTTAACCAATCAATGACTTTGAACCATATCCTCAATTATTGCATGCTTATCCTAG GCCGAGTGTATTCAAAGTATACACCACCCGATCTCGGATCCAAGCCTACCAAAAATTTGGATAT GCGGATCTAGATGACAATATTTATCCTGATCTTTATCTTTTAAATGTATAAATTACTATATGTT ACATTAAATTTTATAATTTTTACACCAAAAAATATAATATTAAATCTCTTTAATTAAAGATTTT TTTTATTTCTCCTTTATTTGGTTGCTGGATTATGATTTTTAGTTGGCTATGGTTGGAGTCTTGG TGATGTGTATAAGTTTTGGACAATTGAATTTTATTTGGAACAAAGTAAACTTAACTTTGAGGGA AAATATGTTTGATTTCGAGTTCTCTTTTTTTTTGTCACGTTTAGATGAAATTTAATTGGAACAA GCATCTAATTAATGAGTGTTCTTGCTCTAGTTTAAATTTAGTTGAGCACTCTCAATATCTTGGA ACACAAAATGACTCTTTTTGGTTTTTGTGATGAATCTTCAGGCCCTGAAGTAGCAAGATTGGCT GACGTGGCTAGGAAAAACCATGTGTACTTGGTAATGGGAGCCATAGAGAAGGAAGGGTATACCC TCTATTGCACAGTTCTTTTCTTTAGTCCACAGGGTCAGTTCTTGGGCAAGCACCGTAAACTCAT GCCCACAAGTTTGGAACGTTGCATTTGGGGCCAAGGGGACGGATCAACCATCCCCGTTTACGAC ACTCCCATTGGAAAACTCGGTGCTGCTATTTGCTGGGAGAATAGGATGCCCCTCTACAGAACTG CATTGTACGCCAAAGGTCAGCTTTTAATGCAATGCCGTTTGAAACATCTAGGCTTTTACAAAAA AATCTTACAAAGTTTTTTTTTTATTTTTCGTTTTTGGTGTTTAGGCATTGAGCTTTATTGTGCA CCTACTGCTGATGGTTCGAAAGAATGGCAATCGTCGATGCTTCACATTGCGATCGAAGGTGGAT GTTTCGTCTTGTCGGCTTGCCAATTCTGCCAGCGTAAACATTTCCCTGATCATCCTGACTACTT GTTTACCGATTGGTACGACGACAAAGAACATGATTCTATTGTCTCCCAAGGTGGAAGTGTCATT ATTTCACCTTTGGGACAAGTTCTCGCCGGACCAAACTTTGAATCAGAGGGTCTCGTCACAGCTG ATATTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.133157155

Conservation Information
Conserved circRNAs	NA
PMCS	0.133157155

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							15987988-15988597(+)
						
						Potential amino acid sequence
						
							MGAIEKEGYTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAIC
WENRMPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDY
LFTDWYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVL
FPEGFIGGYPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAI
EKEGYTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENR
MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTD
WYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVLFPEG
FIGGYPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAIEKEG
YTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENRMPLY
RTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTDWYDD
KEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVLFPEGFIGG
YPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAIEKEGYTLY
CTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENRMPLYRTAL
YAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTDWYDDKEHD
SIVSQGGSVIISPLGQVLAGPNFESEGLVTADI(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	15987988-15988597(+)
Potential amino acid sequence	MGAIEKEGYTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAIC WENRMPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDY LFTDWYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVL FPEGFIGGYPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAI EKEGYTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENR MPLYRTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTD WYDDKEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVLFPEG FIGGYPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAIEKEG YTLYCTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENRMPLY RTALYAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTDWYDD KEHDSIVSQGGSVIISPLGQVLAGPNFESEGLVTADIDKAEKYIVEAASKGAELVLFPEGFIGG YPRGFRFGLAVGVHNEEGRDEFRKYHASAIHVPGPEVARLADVARKNHVYLVMGAIEKEGYTLY CTVLFFSPQGQFLGKHRKLMPTSLERCIWGQGDGSTIPVYDTPIGKLGAAICWENRMPLYRTAL YAKGIELYCAPTADGSKEWQSSMLHIAIEGGCFVLSACQFCQRKHFPDHPDYLFTDWYDDKEHD SIVSQGGSVIISPLGQVLAGPNFESEGLVTADI(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of AT3G44310_circ_g.2

Address

Any questions?

Supported by