Detail information of BGIOSGA031412_circ_igg.1


General Information
CircRNA Name BGIOSGA031412_circ_igg.1
ID in PlantcircBase osi_circ_008697
Alias Chr10:24410257_24411904(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 21046272-21047645  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   AC-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAATTTCACAGCAAGCTCGCACATGCACCAGCCGTGTTTACTCATGTGCAGAGGCAAAAGAAAA
GAACACAGGTATCTCAAACCATCTGAAGAAAAAACTcatcttctccggggaagtctttactcca
atcctatcctcttttgcctccatcgagctaaccagttatgtacaaaacgagaattatcccaaca
acagcgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCTTCTCCGGGGAAGTCTTTACTCCAATCCTATCCTCTTTTGCCTCCATCGAGCTAACCAGT
TATGTACAAAACGAGAATTATCCCAACAACAGCGCAGCAAAGCCTTTTTCTCAGCCAAGGTTTC
GCCCTGTTACACCAAACAGATTGCAAATTATCAGTGCCTCAGAGGGAAAATGGGGGCCATAAAT
TATCTACAAGCACGAAAAAGAAGAGTCACCTCTTGAGGAAGCACTTCTGTAGTTAGTCCTAGGA
CCCTTTTCGCCTGGAACTTTGGAAACTATAAGGGAACTCTGCAGACCCTCCAGTAACTGTCGCA
AACACAAAACCAAAATTAGCATAAATGGCATGCTCAATAAAACAACAGGAAAATCAACTATTAT
CCACTCAGCATAGACATAATTAATAATTTGCCACCACATATTCGGCAATTTATTATTTGCCACT
TAACAAGTACCATATGTCTATAATAAAATGCCACTTCGGGGAAGTTCGTTGCAATTTACCACCT
AAACACCAAGCCCATCTATTTTTCTTCCGGTTTTGGCCATTGGTGATACCGCTTAGCTTGCACG
CTTTGAACTATACGAGGCCCACTTTGAACCAGATGAGTGGCGCATTGCTCCCTACCATCCACGC
GTGCAACGCAACAGTGCCCTGATGCCTCTCGTCATGGTCGCAATACAGCACTCTGGCGAAGACA
TAGGGTCACAACCTAAGGTCTTCAGGCAACTAAATTGGAAACTGCCCCTGACAAAACAATATCA
ACGATCAAGCTGCTGAAGCAGTTGGTACCATTCGACTGGTTTCATTTTTCTAGCATTTTTGGCT
TAGCCATGCGAAGCATTTAGGAATAAGCATTCTTTCCACGCCTTGATTTACAGCTGAATTGCTT
CCCTGTTCTTGCCAACAGAAACATTTACGATGGAAGTCGCATTGTGCCAGGACAAATTGGAGCA
AGGTAATGCTGATTGCTGGCGCCAAGATGGTGACGGTGCCCATCACTGGTTTCCACAAGGGGAT
TGCGGAGGAACAGAAGGCAGCAATTTCGTGAGGAGGCAAGCAAAGAGATTAGCCTATGGCGCCG
GAGGGCAAAACAGAAAGAAAAATAAGTGGGACGGGTATTTAGGGGATAAACTGATGGTGTTTTA
TTAGGAGTGTGCATCTCGAGTGGTAAACAGTTAATTAGCAACTACATAGCGGCAAATTCTTAAA
TACATCTATATTGAGTGGCAAAATAGTTAATTTTTCCCAAAAACAAATGGACTCCTACAAATTT
CACAGCAAGCTCGCACATGCACCAGCCGTGTTTACTCATGTGCAGAGGCAAAAGAAAAGAACAC
AGGTATCTCAAACCATCTGAAGAAAAAACT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021