Detail information of Os06g0183800_circ_g.1


General Information
CircRNA Name Os06g0183800_circ_g.1
ID in PlantcircBase osa_circ_029917
Alias NA
Organism Oryza sativa
Position chr6: 4169544-4170142  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os06g0183800
Parent gene annotation Similar to Chromatin-remodeling factor CHD3. (Os06t0183800-01)
Parent gene strand -
Alternative splicing Os06g0183800_circ_g.2
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os06t0183800-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGTTCATTAGCAGTAGGAAGCCTCAGCTCTTGTCGTGCAGCCTCAAAAATCCCATTATCTCTG
TCATCTGATATATATTGCCACCTTGCATACCCATGCaaataggttcaaggacaggcaattctct
cagcatttcactgtagtctggaacggccggtctatgaccaccaggaaaatcttgttcagcgaga
tcatcagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 392
Transcript exons: 4169544-4169664,4169775-4169915,4170013-4170142
AAATAGGTTCAAGGACAGGCAATTCTCTCAGCATTTCACTGTAGTCTGGAACGGCCGGTCTATG
ACCACCAGGAAAATCTTGTTCAGCGAGATCATCAGGAACAGGGGTTTTTGTTTTAATCACAGCG
TATTCAAGATTCAAACATCTCTCCAAAAGATGGTATCTCTTTCTAATAAACTCAACTATCTTTC
TCTGTGTATCCCTGTAATGGATCATGCTCGTTGGGTTCGACTGGCCTTCTTGTGTGCTTTCCAG
ATTTCCGTTTGTCTCATTGTTTGAGTGAGAACTAATCAGTTCATTAGCAGTAGGAAGCCTCAGC
TCTTGTCGTGCAGCCTCAAAAATCCCATTATCTCTGTCATCTGATATATATTGCCACCTTGCAT
ACCCATGC

Genomic sequence AAATAGGTTCAAGGACAGGCAATTCTCTCAGCATTTCACTGTAGTCTGGAACGGCCGGTCTATG
ACCACCAGGAAAATCTTGTTCAGCGAGATCATCAGGAACAGGGGTTTTTGTTTTAATCTGCAAA
ATACCAAAAATTGCATGTTATACATCCTAAAACCAATAATCTTAGTGTTACCACCCGTGTGAGC
TTTGGGTGCTATATTTAAGGAAATAGGTCACAGGCATACCACAGCGTATTCAAGATTCAAACAT
CTCTCCAAAAGATGGTATCTCTTTCTAATAAACTCAACTATCTTTCTCTGTGTATCCCTGTAAT
GGATCATGCTCGTTGGGTTCGACTGGCCTTCTTGTGTGCTTTCCAGATTTCCCTGTCAGAGATC
CCAAAAAATGAAATGAACCGCATCCTTTAGTCAAGCAGAAATCCTATAACTTCTGTAGAAAAAA
GTTATGTGCGCGCACACTAACGTTTGTCTCATTGTTTGAGTGAGAACTAATCAGTTCATTAGCA
GTAGGAAGCCTCAGCTCTTGTCGTGCAGCCTCAAAAATCCCATTATCTCTGTCATCTGATATAT
ATTGCCACCTTGCATACCCATGC
Conservation Information
Conserved circRNAs osi_circ_006557* osi_circ_016726
PMCS 0.297673873
Functional Information
Coding potential Y
Potential coding position 4169872-4170068(-)
Potential amino acid sequence MIHYRDTQRKIVEFIRKRYHLLERCLNLEYAVIKTKTPVPDDLAEQDFPGGHRPAVPDYSEMLR
ELPVLEPICMGMQGGNIYQMTEIMGFLRLHDKS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017